FMO13666.5prime Sequence
714 bp (446 high quality bases) assembled on 2013-08-23
> FMO13666.5prime
TCAGTCGACATGGAAGGAAAAGTGTGTCGCACTTGCGGCAAGCGCACGAA
TGCTGAAAGATCATTGAATATTTTTGAAAAGCGCAATCAAACTACGCTGG
AACACATCAAACTACTAACTGGAGCTGTGTTAAAGAACTGTAGTACGTTG
CCAAATCGACTATGTGCGTCCTGCCAAACTTGTTTGCAACAAGCCATATC
CTTTAGGGAACGCTGTTTGGAAGTCCAAAGGGAGTTGCTCCATTCCCAAG
ATGATGAAGACTTCCTTAGAATCTGCCAGGAATCTCCCAAAAGTGTCCTT
GAGCAGGAGGAGTTGGAACTGGATCTGGCAGAAATAAGCATAGAAGTCGA
GCGATTAGACGATCTCAATGAAGGCCCATTCAAGCTCCGGTTTAAAGTGG
AGGACATTCTAATGAATCTAAATCAACGAAGACGAGCCCAATAATGAGAC
GATATTGATTATAGTGAATGGATTACTTATTTACGAAGCGATACTGAGTA
GATGCAAGCAGACTCAATCAGACTCTGAGATCCCAAAAAGAAGATCGTCG
AATCCCCGCGACTCATAGACTTCTTTGTGAGGATGCGAATCAATAAAGAT
CGATATCATCTACTGCATGTAGCGACTCGCGCGTCAGAGTGTGCATCTTG
AGATCGCTCTGCCGCGCGACTACGTCATCCAGCTACGGGAAGCTCAGGCA
ACTGTCCGACTTTC
FMO13666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ranshi-RA | 1159 | CG9793-RA | 34..697 | 10..636 | 2430 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8729096..8729484 | 507..129 | 1445 | 97.4 | Minus |
| 3R | 32079331 | 3R | 8729541..8729660 | 129..10 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:39:08 has no hits.
FMO13666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:10:56 Download gff for
FMO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ranshi-RA | 34..624 | 10..576 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:26 Download gff for
FMO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ranshi-RA | 34..624 | 10..576 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:26 Download gff for
FMO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8729541..8729660 | 10..129 | 100 | | Minus |
| 3R | 8729042..8729483 | 130..552 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:10:56 Download gff for
FMO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4554764..4555205 | 130..552 | 95 | <- | Minus |
| arm_3R | 4555263..4555382 | 10..129 | 100 | | Minus |
