FMO13669.5prime Sequence
702 bp (683 high quality bases) assembled on 2013-08-23
> FMO13669.5prime
TCAGTCGACATGGCTGATGCCGCGGAGAGTAAGCCACTGGCCGCCGAACA
GCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCCGCCGAATCCGC
AGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGCAGGGACAGCAG
GGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACCAAAGTCACCGG
CACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTTCATCAACCGCA
ACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCATTGCGCGGAAC
AACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAGGTCGTTGAGTT
CGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAACGTGACCGGTC
CCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGGACAAGCGCCGT
AACTTCCGTCTCTGGATGAAGAAGAATCGCCGCAAGGATGGCGAAGTGGA
AGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCAGCAGGCGGCAC
CAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCGGCCCGCGTCAC
CACGACAGACCTTCCGCCGAGGACCACCCGGTGGACCGCCCGGAGGACCT
CGAGGTGGCCCCCGAGGATCGCCTGTGGAGCTCCCGGTGGCCCCCGGCGC
TT
FMO13669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yps-RB | 2677 | CG5654-RB | 265..958 | 10..701 | 3375 | 99.3 | Plus |
| yps-RA | 1750 | CG5654-RA | 265..958 | 10..701 | 3375 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12123056..12123575 | 701..184 | 2455 | 99 | Minus |
| 3L | 28110227 | 3L | 12124712..12124886 | 184..10 | 875 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2966 | 50..260 | 225 | 58 | Plus |
FMO13669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:08:42 Download gff for
FMO13669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yps-RA | 259..958 | 2..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:03 Download gff for
FMO13669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yps-RA | 259..958 | 2..702 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:03 Download gff for
FMO13669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12123055..12123574 | 185..702 | 98 | <- | Minus |
| 3L | 12124712..12124892 | 2..184 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:08:42 Download gff for
FMO13669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12116155..12116674 | 185..702 | 98 | <- | Minus |
| arm_3L | 12117812..12117992 | 2..184 | 97 | | Minus |
