FMO13671.5prime Sequence
1035 bp (915 high quality bases) assembled on 2013-08-23
> FMO13671.5prime
TCAGTCGACATGAAAATCCATTTTCGGGAACAGTACGGAAGAAAGGGGGA
GGAAATCCTCTATGTGACGCCAGCAGATCAGAGCAACATTGTGCGTGTGC
CGCTGCGTGGGGATAAGCTGGTCATCCAGGAGAAGTTCCTGCTGTTTCGC
GTGCTGCAGAAGGTCTTCCTGCCCAAGGGCTATCCGGATAGTGTCAGCGA
GGACTATGCAGCATACCAGATCTGGGACACGGCCCAGGCCTTCTGCAGCA
CCATCTGCGGCACCCTGTGCACACACGCCATCTTGAAGGGCATCGGCGTG
GGCAGCGAAAACATCAATGCCTTTTCCGCAACGGCGACTTGGATCTTGAA
GGAGGGCAGTGGTCACGTGGGTCGCATTGTGTTCGCATGGTGGCAGGGCT
CCCAATTGGATGTGGACTCAAAGAAATGGCGCCTGCGTGCGGATTTTCTG
AACGATCTGGCCATGGGCATCGAGATCTACGTGCTTCCCAAGTATCCGCA
TTTCAGCACCCAAATCCTGTGCTGCTCGACCCTGCTGAAGGCGATTGTGG
GCGTTGCCGGAGGTGCCACTAGATCGGCATTGACCCAGCATCATGCCTTG
AGGGGCAACCTGGCCGATGTGGCATCCAAGGACAGTTCACAGGAGACGTG
CGTGAATCTGGTGGCCTCCTTTGTGGGCCTGTATCTCCTCTCGCTGATCA
AGAGTCAGCGGTCCTGTATACCATATTCTACGTGGTGGTCAGCCTGCATC
TGTATGCCAATCTGAAAGCAGTACGCGCAGTATGCTTGCGAAGCTTCAAC
GAGTCGCGCTATTTGATCGCCCTGATGAGTTTTTCAGTCGTCAAGATGCT
CAGTCCGCAGCAGTGAACGCCATGGAGCGTGTGACGTTGGCCAAACGGTT
TCAGTGTCCACTGAACTTAAAGCTCGGACTGAACGTAAAATTTGATTGAC
GAGTACAAAAGCAGCAGCCGTTATTGAGAACATACTGTCCTCCTTCGATC
CCACGAGACCTCATCATCGCAAGACCCAAAAAATG
FMO13671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10338-RB | 2418 | CG10338-RB | 479..1509 | 10..1031 | 4730 | 98 | Plus |
| CG10338-RA | 2351 | CG10338-RA | 412..1442 | 10..1031 | 4730 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18696565..18697358 | 74..863 | 3740 | 99.2 | Plus |
| 2L | 23513712 | 2L | 18697421..18697561 | 863..1002 | 440 | 93.7 | Plus |
| 2L | 23513712 | 2L | 18696142..18696208 | 10..76 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:26 has no hits.
FMO13671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:08:46 Download gff for
FMO13671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10338-RA | 404..1445 | 2..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:08 Download gff for
FMO13671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10338-RA | 404..1445 | 2..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:08 Download gff for
FMO13671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18696134..18696208 | 2..76 | 94 | -> | Plus |
| 2L | 18696568..18697358 | 77..862 | 99 | -> | Plus |
| 2L | 18697421..18697596 | 863..1035 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:08:46 Download gff for
FMO13671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18696134..18696208 | 2..76 | 94 | -> | Plus |
| arm_2L | 18696568..18697358 | 77..862 | 99 | -> | Plus |
| arm_2L | 18697421..18697596 | 863..1035 | 91 | | Plus |
