FMO13675.5prime Sequence
1040 bp (916 high quality bases) assembled on 2013-08-23
> FMO13675.5prime
TCAGTCGACATGTATCCGTATTACGAGCAGGACTGGAGCGTTCTGCCGCC
GGAGAACAATCGCAGATTTAATCCAGCCTTCAATATGGCCACCATACGGC
AAGCATTCACAGAGGCGGTGGAGAGAGTCAGAATGCCTACGCCCACACGC
CTGCGCGACCTCATCCGACAGATTCGCGCCGCCAGAACCGCCGCCGAGGA
GCGGGCGGTGGTCAACAAAGAGTGCGCCTACATACGGAGCACGTTCCGCG
AGGAGGACTCCGTCTGGCGCTGTCGCAACATTGCCAAGCTGCTGTACATA
CACATGCTCGGCTATCCGGCTCACTTTGGCCAACTGGAGTGCCTTAAGCT
GACGGCCAGCACGCGGTTCACAGACAAGCGGATCGGCTACCTGGGCGCCA
TGCTGCTGCTGGATGAGCGGCAGGATGTCCACCTGCTTATCACCAACTGC
TTGAAGAACGACTTGAACAGCTCTACGCAGTTCGTCGTGGGCCTAGCCCT
ATGCACTCTGGGTGCGATCGCCTCACCGGAGATGGCCCGAGATCTGGCCA
GCGAGGTGGAGCGTCTGATGAAGTCCCCGAACACGTACATTCGCAAGAAG
GCGACGCTGTGCGCCTTTCGCGTCATTCGCCGTGTGCCCGAGCTAATGGA
GATCTTCTTGCCGGCCACGCGTTCCCTGCTCAGCGAGAAGAATCATGGAA
ATTTTGATCACTGGCGTTACGCTGATCACGGAGATGTGCGAGAACAGTTC
GGACACGCTGATGCATTTCAAGAAGATTGTGCCGAACTTGGTGCGCATCC
TGAAGAATCTGATCCTGGGCGGCTATTCGCCGGAGCACGATGTCAGCGGC
GTGAGCGATCCGTTCCTGCAGTGAAGATACTGCGACTGCTGCGCATACTG
GCCACAACGATCCCGGAACGCCCTCGGAAGACGATGAACCGATTATATCT
GGCCCCACGTGTGGCCCCCACCACCGGAGACGAGCCCAGATGGTGGGGGC
GATTACCATCCTCCTACGAGAACCGCGTCGCTCTCTCCAT
FMO13675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1gamma-RB | 4648 | CG9113-RB | 240..1237 | 9..1021 | 4490 | 97.3 | Plus |
| AP-1gamma-RD | 4666 | CG9113-RD | 240..1255 | 9..1021 | 4300 | 95.6 | Plus |
| AP-1gamma-RI | 4887 | CG9113-RI | 533..1474 | 65..1021 | 4210 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9111854..9112093 | 459..698 | 1185 | 99.6 | Plus |
| X | 23542271 | X | 9111597..9111786 | 269..458 | 950 | 100 | Plus |
| X | 23542271 | X | 9111385..9111528 | 126..269 | 720 | 100 | Plus |
| X | 23542271 | X | 9113641..9113782 | 774..913 | 610 | 98.6 | Plus |
| X | 23542271 | X | 9112164..9112239 | 700..775 | 380 | 100 | Plus |
| X | 23542271 | X | 9111078..9111143 | 62..127 | 330 | 100 | Plus |
| X | 23542271 | X | 9108930..9108986 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:32 has no hits.
FMO13675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:08:50 Download gff for
FMO13675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RB | 234..1167 | 3..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:10 Download gff for
FMO13675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RB | 234..1167 | 3..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:10 Download gff for
FMO13675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9111854..9112092 | 459..697 | 99 | -> | Plus |
| X | 9112163..9112239 | 698..775 | 98 | -> | Plus |
| X | 9113643..9113804 | 776..939 | 95 | | Plus |
| X | 9111082..9111143 | 66..127 | 100 | -> | Plus |
| X | 9111387..9111528 | 128..269 | 100 | -> | Plus |
| X | 9111598..9111786 | 270..458 | 100 | -> | Plus |
| X | 9108924..9108986 | 3..65 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:08:50 Download gff for
FMO13675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9002957..9003019 | 3..65 | 95 | -> | Plus |
| arm_X | 9005115..9005176 | 66..127 | 100 | -> | Plus |
| arm_X | 9006196..9006272 | 698..775 | 98 | -> | Plus |
| arm_X | 9005420..9005561 | 128..269 | 100 | -> | Plus |
| arm_X | 9005631..9005819 | 270..458 | 100 | -> | Plus |
| arm_X | 9005887..9006125 | 459..697 | 99 | -> | Plus |
| arm_X | 9007676..9007837 | 776..939 | 95 | | Plus |
