FMO13676.5prime Sequence
390 bp (326 high quality bases) assembled on 2013-08-23
> FMO13676.5prime
TCAGTCGACATGCTGTTCGAGAATCCGGCGGTTGCGGCCAAGTTGCCCTT
TCCGTACAACGTGCCCCCGCCCCTGCAGGCGGCGGCGGCAGCAGCGGCGG
CTGTCCCAAATCTAAGGTTTCAGACACCCATTAAAGCGTTTGCCTGCCTG
ACAGCAGCCACAAGGTCAGTATCGGAGATGAACGCCACTTCTCTATATGC
CGGCAATCCCATGGAGAACGCGGCCGCAGCAGCCGCCGCCGCAGCAGCGG
GCTTGATTGATCCGCACCACAATCGCGATCTCCACCAGGCGCTGGTGGCC
TCGATAGCCAATAATAGTGTGGCCGCCATCGGCGGTGGCCTGACACAGCG
GCAGTCTTTGAAGAGTGCCGCTCCACAGTCCCAGAAGGTG
FMO13676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RF | 10175 | CG5099-RF | 595..973 | 10..388 | 1805 | 98.7 | Plus |
| msi-RC | 2888 | CG5099-RC | 595..973 | 10..388 | 1805 | 98.7 | Plus |
| msi-RB | 2806 | CG5099-RB | 513..891 | 10..388 | 1805 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25595073..25595258 | 203..388 | 790 | 97.3 | Plus |
| 3R | 32079331 | 3R | 25519623..25519731 | 10..118 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 25564078..25564129 | 115..166 | 260 | 100 | Plus |
| 3R | 32079331 | 3R | 25574882..25574922 | 163..203 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:36 has no hits.
FMO13676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:08:52 Download gff for
FMO13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RB | 502..893 | 1..390 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:12 Download gff for
FMO13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RB | 502..893 | 1..390 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:12 Download gff for
FMO13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25519612..25519729 | 1..116 | 96 | -> | Plus |
| 3R | 25564080..25564127 | 117..164 | 100 | -> | Plus |
| 3R | 25574884..25574922 | 165..203 | 100 | -> | Plus |
| 3R | 25595074..25595260 | 204..390 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:08:52 Download gff for
FMO13676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21345334..21345451 | 1..116 | 96 | -> | Plus |
| arm_3R | 21389802..21389849 | 117..164 | 100 | -> | Plus |
| arm_3R | 21400606..21400644 | 165..203 | 100 | -> | Plus |
| arm_3R | 21420796..21420982 | 204..390 | 96 | | Plus |
