FMO13679.5prime Sequence
948 bp (772 high quality bases) assembled on 2013-08-23
> FMO13679.5prime
TCAGTCGACATGGCGGACCAGTTGAACAACGAGCCCGGCCAACCCACGCC
GCTCATGTCCATTCGCTTCGACCAGCAGCAGCACGAAAGTGCGGCGGCCA
ATGGAAATGAGAACGGCAATGGTAATGCCAATGGCGACGGCGATGCCTCC
GAAGATGCTGTTGATGCCGAAAAAACGCCCGGAGAACTGGTCCTGCCCAA
GGCCTTGGAGGACGTTCTGGCTTTGAAGGATCAAAGGGCAGCCGAGTTCA
CGGTGGACGCCGATTCGCAGGGTGGCAGTGGGGGTGCTACCCAGGACGGC
GACGAAGCGGATGTGGGCGAGGACAGCGAGGAGGATGCGGATAACCAGGT
GAACGGGAGTGCCAGCCAAAAGACCGGCAAGCAGAGCAAGGCGGAGCGTA
ACAAATAGAAGAAGAAGCGAAAGAAGCAGAACAGGAAGATACGCCACCAG
ATTGAGTTCGCACGGCAGCAGCAGTTGGCCCAAGCGGAGGAGAACGAACC
GGAGGCCAAGGACTCGGAGACAAAAGCCCATGGCAGCGAGGACGACAGGT
TGCCGAAAAGGAAAAGAATGACAAACGCAAAGAGAGTCGCAGCAAGCGCA
GGAAGGATCGTAGTGATGAGAAAGATACGGACAAAAGGCTGGCGAGGCCA
ATGATGAAAATGTGACCATTGAATATGTGCCCGAAAAGATACCATTGCCG
ATTTGGCGCCAATGTACCGCCAGTTTATCGTGTGTTCGAAATCTTCAAGC
TGGAAACAAACCAAGCCTGTGAGAGACAAATCTTCGCACGATTCTGAGTC
CATCCCAGGACAAAAGCTACAGACAACAGCTCGAGACGAGACGATGACGC
GATGATGACGAAGAGCGCAGAGACAGAGAGCTGTCAGCGAACTTAGAACT
GACCGCTTTGATGGTGCGACTGAACACTGTCCTTCGACCTGACGTATT
FMO13679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3605-RB | 2684 | CG3605-RB | 82..958 | 10..869 | 3950 | 97.8 | Plus |
| CG3605-RA | 2403 | CG3605-RA | 82..958 | 10..869 | 3950 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3028366..3029008 | 672..32 | 3085 | 99.4 | Minus |
| 2L | 23513712 | 2L | 3028097..3028308 | 869..673 | 390 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:39 has no hits.
FMO13679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:08:54 Download gff for
FMO13679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 82..958 | 10..869 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:15 Download gff for
FMO13679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3605-RA | 82..958 | 10..869 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:15 Download gff for
FMO13679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3028090..3028308 | 673..877 | 91 | <- | Minus |
| 2L | 3028366..3029006 | 34..672 | 99 | <- | Minus |
| 2L | 3029064..3029087 | 10..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:08:54 Download gff for
FMO13679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3028090..3028308 | 673..877 | 91 | <- | Minus |
| arm_2L | 3028366..3029006 | 34..672 | 99 | <- | Minus |
| arm_2L | 3029064..3029087 | 10..33 | 100 | | Minus |
