FMO13680.5prime Sequence
884 bp (637 high quality bases) assembled on 2013-08-23
> FMO13680.5prime
TCAGTCGACATGCACCCACGATACAGCCCAGCCCCGCCCCCTCAGCAACA
GCAACAGATGGGCGGACCGCCACACCAGCAGCAGGGCGGCGGGGGAGGTG
GAGGCGTTAGCATGAGGGGGCCATCGAATGCCCAGCAATTGCCGCCGCAG
ATTCCGAGATCCCAGAACTATTCAAACGGGAGCTCGTCTAGCGCCGCCGC
CGCACCTCTAACATCGCGCAGCGCCTTCCCCGGCGCCCCGCTCACCGCCT
CAGCCGTCGCACTCAAGGGCGCTCTACCCCAGCGGCCACCGGCCATGACA
AGTCCCGCAGCCGCTGCCGCTGGCGCCGCCCTGGCCGCCGGTGCACCTTA
TCGCGGTGCCGCCAGCTGGACCCCGCAGGGTTATGCCCCGGCCGCTGCCG
CACCCGCCGCTGCTGTTGCCCAGCAAGCAGCCTACCGCTATACGGCGCCG
CTGCCCCAGCCGGCGTATGCCGCCTATACGCCGCACACGGCCACGACACC
GGCCACAACCACGTACGGTCAGCGAGTGCCGACGGCAGCCTCACCGAGCA
ACACCAACTCGAGCAGCTCCTCGAACACTGACTCCCGGAGCGGCACCCTG
AGCACTCAGCCTGAGCAACACGACGAACACCAACACGAACATGGGTCCCA
ACGGGCACGGGTACAGAATCAGAACCCAACATGGCGGCGAGCAGTTGTCC
AAGACAAATCTCTACATTCGCGGTCTGCAGCAGGCACAACCGACAGGGAT
CTAGTGAATATGTGTGCACATACGGACAATATATCAACCATGCTATTTAG
ATAACACAAACAGATGTAAAGGTTACGCTTCGTCGACTTCGAGCAGCCAG
CTCGCGATGCGCCGTAAAACGATTGCATGGGACG
FMO13680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shep-RA | 3036 | CG32423-RA | 373..1255 | 10..882 | 3840 | 96.7 | Plus |
| shep-RB | 7989 | CG32423-RB | 541..1253 | 174..882 | 2945 | 95.4 | Plus |
| shep-RD | 4580 | CG32423-RD | 1996..2704 | 178..882 | 2940 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5218950..5219285 | 513..178 | 1650 | 99.4 | Minus |
| 3L | 28110227 | 3L | 5170187..5170441 | 770..513 | 970 | 96.1 | Minus |
| 3L | 28110227 | 3L | 5276154..5276322 | 178..10 | 845 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2417 | 34..84 | 120 | 70.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..198 | 37..86 | 115 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9228 | 37..86 | 115 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 164..211 | 418..373 | 109 | 72.9 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9194..9241 | 418..373 | 109 | 72.9 | Minus |
FMO13680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:08:55 Download gff for
FMO13680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shep-RA | 366..1257 | 3..884 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:17 Download gff for
FMO13680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shep-RA | 366..1257 | 3..884 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:17 Download gff for
FMO13680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5218950..5219285 | 178..513 | 99 | <- | Minus |
| 3L | 5276155..5276329 | 3..177 | 97 | | Minus |
| 3L | 5170187..5170440 | 514..770 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:08:55 Download gff for
FMO13680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5163287..5163540 | 514..770 | 96 | <- | Minus |
| arm_3L | 5212050..5212385 | 178..513 | 99 | <- | Minus |
| arm_3L | 5269255..5269429 | 3..177 | 97 | | Minus |
