FMO13682.5prime Sequence
850 bp (517 high quality bases) assembled on 2013-08-23
> FMO13682.5prime
TCAGTCGACATGGACGTGCAACCGCCACGCGATGCCAGTTTACGAAATAT
TATCGACAAACTGGCGGAGTTTGTGGCCAGAAATGGGCCGGAATTCGAGG
CGATAACCAAGCAGAAGCAGCAGAACAATCCAAAGTTCGAGTTCCTCTAC
GGCGGGGAGTTCGCCAACTATTATCAATTCAGGGTGGCAGCGGAACAAGC
TCTGCTAAAGCAACAGGCCATTAACCAACAACTGCCACCAGGTGCTCCAT
CCGGCCACTACATGCAACATCCGCCGCCAATGCAGCAATCCCAACCACCG
GGCCTCTATCCGCCACCCAATCAGCAGCCACCGCACCCGCCCGAAACCGC
ACAAGACAATATGCAACAGCAAACACAGCACTCCTGGCCGCCGACTCGGC
AACGGTGGGCCGCCAAACAATCAGCAGGCCAATGGCAATCCCATGGCCAT
GAATCTAACGTCACAACTGGAAGCCATCAGATGCAGCAGAGTCGCTGCGG
GAACAGATCCAGCAATCCGAAGCGATCTCTCGCACAGCACACGGCCCTGA
TGAATCAGAAGACCAAGCAGATCGAGGATGCATTGCGCGCGCAGACGGCG
CAGCAGACAGATGGCTGCGACAGGCATTGTGCTGAGGACTCGATGCGTTC
TGCAGCGATCATCGAGTCTGCACGAGACAGCATCTCTGCAGCAGACTGAT
TTAAGCATCACGACAGCGCAAATCATGTCGTTACATATCTTTAAAGAGCT
TGTCATGTCACGTTCAGCAAATGCATCTTATTATTAGTATGATTACTCCA
TCACTGCATGCCAGACTCATGACTGAGAACAGCTCGGACCTCCCCATTCG
FMO13682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-RA | 3071 | CG33522-RA | 116..971 | 10..811 | 3040 | 93.7 | Plus |
| scaf6-RE | 2998 | CG33522-RE | 116..818 | 10..691 | 3010 | 97 | Plus |
| scaf6-RC | 1415 | CG33522-RC | 116..656 | 10..544 | 2555 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17041693..17042040 | 544..203 | 1445 | 97.7 | Minus |
| 3L | 28110227 | 3L | 17042103..17042274 | 202..31 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 17040536..17040602 | 606..543 | 205 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:49 has no hits.
FMO13682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:00 Download gff for
FMO13682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RA | 105..858 | 1..722 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:21 Download gff for
FMO13682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RA | 105..858 | 1..722 | 95 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:21 Download gff for
FMO13682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17041694..17042040 | 203..543 | 98 | <- | Minus |
| 3L | 17042103..17042273 | 32..202 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:00 Download gff for
FMO13682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17034794..17035140 | 203..543 | 98 | <- | Minus |
| arm_3L | 17035203..17035373 | 32..202 | 100 | <- | Minus |
