FMO13683.5prime Sequence
1030 bp (938 high quality bases) assembled on 2013-08-23
> FMO13683.5prime
TCAGTCGACATGGAAACCGTGGTTGCCTTCAACAATGAGCTCTCCGGACT
CTATGACAGCCGACCGCCCATTTCCAAAGCGAAGATGGCCGCCATCACCA
AGTCGGCGATGCGGGCCATCAAGCTGTATAAGCACGTCGTCCAGAGTGTG
GAGAAGTTCATCTTGAAGTGCAAGCCGGAGTACAAAGTACCCGGGCTGTA
TGTAATCGACTCGATAGTGCGCCAGTCGCGCCACCAGTACGGTATGGACA
AGGATCTGTTCGCGCCCCGATTCCAGCGTAATCTCACGGAGACCTTTGCC
AACTTGTTCCGGTGCGCTCCGGAGGACAAGAGTCGCATCATCCGGGTACT
GAACCTGTGGCAGAAAAACAACGTCTTCAAGTCCGAGGTCATTCAGCCGA
TCTTCGACCTGGCCGACCCAAACCACCCAATCTACCACCAGATGCCTCCG
GTGGGTGGCAGTGGAGGACAGGGCGGCGGCGTGGGTCCAGGACCCAGCAG
CAGCGGTGCTCTTAGCCTGGCGGACATATCGAGCGGTCCGAACGGTCTAA
ACAGCTCCGGAATGGAGATAAGCATGAACAGCTCCGGGGGCGACGATAAG
ATGGGCGGTGCCATGCCCGACTTGTCGGAGAAGAAGATCAAGCAGCTGCT
AAACAATCCGAATGTGCTGCGGCAGCTCCATACGCTGCAGAACTTCCAAA
ATTTGAAGCCGCAGAGGAGAACCAGAAGCATCGCTATCAGACGAGGCACT
GCAGCAGCATTTCCAGACGTAATGAAGGAAATGCTGGTATGCCGCCGGGC
ATGGGCATGGGCATGAACATGACGACAGCATGGACCTTTACAAGGATGTC
GAGTTCATATCGGAGCAACAGACCATAGAGGTGATCAATCTGGATGGTGG
CGATTCCCGCAGCCCGACGCCCGACCGTGATCGCTACAAGCGCAGTCGCC
GGAACAAGTCGCAGCCCGGACGAAGATCTCCCCCGAGGACTTGCGCCGGA
AGGAAGAAGGGCAAGAATCGACGTTCCGCG
FMO13683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-RA | 4389 | CG4266-RA | 197..1215 | 8..1024 | 4715 | 98.1 | Plus |
| CG4266-RD | 4380 | CG4266-RD | 197..1206 | 8..1024 | 4625 | 97.6 | Plus |
| CG4266-RC | 4346 | CG4266-RC | 197..816 | 8..627 | 3100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21167595..21168185 | 628..38 | 2955 | 100 | Minus |
| 2R | 25286936 | 2R | 21166889..21167043 | 778..627 | 625 | 98.1 | Minus |
| 2R | 25286936 | 2R | 21166728..21166834 | 882..777 | 470 | 98.1 | Minus |
| 2R | 25286936 | 2R | 21165799..21165876 | 956..879 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:52 has no hits.
FMO13683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:01 Download gff for
FMO13683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RA | 189..1194 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:23 Download gff for
FMO13683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RA | 189..1194 | 1..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:23 Download gff for
FMO13683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21166890..21167042 | 628..776 | 97 | <- | Minus |
| 2R | 21165755..21165874 | 881..1004 | 93 | <- | Minus |
| 2R | 21166730..21166834 | 777..880 | 98 | <- | Minus |
| 2R | 21167596..21168183 | 40..627 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:01 Download gff for
FMO13683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17054235..17054339 | 777..880 | 98 | <- | Minus |
| arm_2R | 17053260..17053379 | 881..1004 | 93 | <- | Minus |
| arm_2R | 17054395..17054547 | 628..776 | 97 | <- | Minus |
| arm_2R | 17055101..17055688 | 40..627 | 100 | <- | Minus |
