FMO13688.5prime Sequence
364 bp (247 high quality bases) assembled on 2013-08-23
> FMO13688.5prime
TCAGTCGACATGAATAAGTTTGTTTCCCACAACCTTGGTCGCGATCCATA
TCGGACCTTCAGCCCAGAAATGTACCCGTTATCAAGCCCATTGGGACCGC
ATGGAACTGAAATGGCGGAAGGTAATGGCGAACTGTTGGATGACATTAAC
CAGAAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATTATCCCAA
GCTGCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTGGATGAGA
TCTACAAACCCGCAAGTTGGCTCACGCCGAGCTGGATAACCCCCCCTGAA
CCCCTTCAGGAGTTCCCGTCAATGGGGCTTGATGGGTGGGAACGTTCTGG
AATCGAACCTGAAC
FMO13688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syp-RM | 3407 | CG17838-RM | 509..868 | 10..361 | 1390 | 93.9 | Plus |
| Syp-RK | 7374 | CG17838-RK | 509..868 | 10..361 | 1390 | 93.9 | Plus |
| Syp-RI | 3123 | CG17838-RI | 509..868 | 10..361 | 1390 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20791744..20791865 | 109..230 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 20772795..20772882 | 22..109 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 20791935..20791995 | 227..286 | 240 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:58 has no hits.
FMO13688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:05 Download gff for
FMO13688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syp-RI | 509..786 | 10..286 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:26 Download gff for
FMO13688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syp-RI | 509..786 | 10..286 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:26 Download gff for
FMO13688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20772796..20772882 | 23..109 | 100 | -> | Plus |
| 3R | 20791745..20791863 | 110..228 | 100 | -> | Plus |
| 3R | 20791937..20791995 | 229..286 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:05 Download gff for
FMO13688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16617659..16617717 | 229..286 | 96 | == | Plus |
| arm_3R | 16598518..16598604 | 23..109 | 100 | -> | Plus |
| arm_3R | 16617467..16617585 | 110..228 | 100 | -> | Plus |
