FMO13690.5prime Sequence
894 bp (698 high quality bases) assembled on 2013-08-23
> FMO13690.5prime
TCAATCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGATCAGTCC
GCCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAGCAGGATC
CTCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCAGCTACAG
CAAAGCTTCTGCGAGACAACGTATCACATGAAAATACTGGTGCCCGCGGT
GGCCTCCGGGGCCATCATTGGCAAAGGTGGCGAGACGATCGCCTCCCTGC
AGAAGGACACGGGTGCTAGGGTCAAGATGTCCAAGTCGCACGACTTCTAC
CCAGGCACCACCGAACGCGTGTGCCTGATCACCGGCTCCACGGAGGCTAT
CATGGTCGTGATGGAGTTCATCATGGACAAGATCCGCGAGAAGCCCGACC
TGACCAACAAGATCGTCGATACCGACTCAAAACAGACACAGGAGCGCGAC
AGCAGGTCAAGATCCTGGTGCCCAACTCGACCGCCGGCATGATCATTGGC
AAGGGCGGTGCCTTCATTAAACAGATCAAGGAGGAGAGCGGCTCCTATGT
CCAGATCTCGCAAAGCCCACGGATGTGTCGTTGCAGGAGCGCTGCATCAC
ATCATAGGCGACAAGGAAACAATAAGAACGCCTGCAAGATGATCCTCTCG
AAGATCGTCGAAGATCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCG
GACGTCAGCGGCCCGGTGGCAACTTTAATCCGACGCTCCCCGTACGCCAC
AATCAGAATGCATCAACTCGAGCACGCTCGTGACTCCCACGTGGGCACCA
CGATCGGCGGTGCAAACTCGGCGGCAGCTGCTAGTCAACGGACCGGCATC
AATTGTCATCAATTCTGGTCACCCAATCGGGCCAATCTACGTTG
FMO13690.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RC | 2619 | CG8144-RC | 133..1026 | 9..882 | 3885 | 97.2 | Plus |
| ps-RR | 3624 | CG42670-RR | 1290..2031 | 161..882 | 3125 | 96.6 | Plus |
| ps-RQ | 2492 | CG42670-RQ | 158..899 | 161..882 | 3125 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445821 | 302..854 | 2005 | 95.4 | Plus |
| 3R | 32079331 | 3R | 9436967..9437119 | 9..161 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 9445044..9445188 | 161..305 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:01 has no hits.
FMO13690.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 10:09:08 Download gff for
FMO13690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RC | 133..1022 | 9..878 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:18:28 Download gff for
FMO13690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RC | 133..1022 | 9..878 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:18:28 Download gff for
FMO13690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9445044..9445187 | 161..304 | 100 | -> | Plus |
| 3R | 9436967..9437118 | 9..160 | 100 | -> | Plus |
| 3R | 9445255..9445848 | 305..878 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 10:09:08 Download gff for
FMO13690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5262689..5262840 | 9..160 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 161..304 | 100 | -> | Plus |
| arm_3R | 5270977..5271570 | 305..878 | 95 | | Plus |
