FMO13701.5prime Sequence
1061 bp (957 high quality bases) assembled on 2013-08-24
> FMO13701.5prime
TCAGTCGACATGCAGAAGATCCGCCAACAGCACCAGCACTTGAGTAGCAG
CAACGGCCTTCTTGGCAATCAACCTCCTGGTCCGCCGCCACAGGCCTTCA
ATCCATTGGCGGGCAATCCGGCAGCTCTCGCCTACAATCAGCTTCCTCCG
CATCCGCCGCACCACATGGCCGCCCATCTGGGCAGCTATGCCGCTCCACC
GCCTCACTATTACATGAGCCAGGCGAAGCCCGCGAAATATAATCACTATG
GCAGCAATGCAAACAGCAACAGCGGCAGCAACAACAGCAACAGCAACTAT
GCCCCCAAGGCCATACTGCAGAATACGTATAGGAATCAGAAGGTGGTGGT
TCCACCAGTGGTGCAGGAAGTAACCCCCGTGCCGGAACCGCCAGTGACCA
CCAATAATGCCACCACCAACAGCACCAGCAACAGCACAGTCATAGCTAGC
GAGCCTGTAACCCAAGAGGATACTTCTCAGAAGCCGGAGACTAGACAGGA
GCCAGCTTCAGCGGACGATCATGTCAGCACGGGGAATATCGATGCTACGG
GAGCACTGTCCAACGAGGACACGAGCAGTTCAGGACGCGGGGGCAAGGAC
AAGACCCCAATGTGCCTGGTCAATGAGTTGGCCAGGTACAACAAGATCAC
GCATCAATATCGGTTGACTGAAGAACGAGGACCTGCCCACTGCAAGACCT
TCACGGTGACACTGATGCTGGGCGATGAGGAGTACTCGGCGGACGGTTTC
AAGATTAAGAAAGCGCAACATTTGGCGGCTAGTAAAGGCTATCGAGGAAA
CCATGTACAAGCATCCGCCGCCGAAGATTCGCCGCAGCGAAGATGGCGGT
CCCATGCGCACACACATTACGCCGACGTGGAATTGAATGCCCTGCCATGA
AGTGGGACAGCGTACTTCTACCTGCTGGATCCACTCAGATCTCCACGGAT
CATAGTGCGCGAGTTTGCGCGTCATTTACTACTGCGCCAGACAAGGATGC
GCACACCTCCACCACTTGCCTACGCTCTCCGCAGCGGCCTGCCATGGATT
CAGGCAATCAA
FMO13701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-RC | 3509 | CG5753-RC | 611..1675 | 10..1051 | 4665 | 97.1 | Plus |
| stau-RB | 4910 | CG5753-RB | 281..1345 | 10..1051 | 4665 | 97.1 | Plus |
| stau-RA | 5240 | CG5753-RA | 611..1675 | 10..1051 | 4665 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18121786..18122711 | 932..10 | 4370 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 23:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6888 | 269..436 | 127 | 54.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 936..1186 | 235..480 | 126 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6825 | 397..436 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6562..6792 | 212..436 | 114 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2338 | 377..436 | 113 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2377 | 397..442 | 113 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6826 | 381..448 | 112 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1589 | 383..442 | 110 | 68.9 | Plus |
FMO13701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:26 Download gff for
FMO13701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RA | 604..1536 | 2..932 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:31 Download gff for
FMO13701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RA | 604..1536 | 2..932 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:31 Download gff for
FMO13701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18121786..18122718 | 2..932 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:26 Download gff for
FMO13701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14009291..14010223 | 2..932 | 98 | | Minus |
