FMO13702.5prime Sequence
1022 bp (931 high quality bases) assembled on 2013-08-24
> FMO13702.5prime
TCAGTCGACATGAAGCGTGAAATGAACGATGAAGGGGAGGGACCACAGGA
CCAGAAGCGCAATCGCCGCAACGAGGAGACCGTTCGCATACTGATTCCGA
GCAGTATTGCTGGGGCTGTCATTGGCAAAGGAGGACAGCACATTCAGAAG
ATGAGGACTCAGTATAAAGCCACTGTGTCTGTCGACGATTCCCAAGGCCC
CGAACGAACCATCCAAATATCGGCGGATATAGAGTCCACATTGGAGATTA
TCACCGAAATGCTGAAATACTTTGAGGAGCGCGACGAGGACTTTGATGTG
CGTCTACTTATACACCAGAGCTTGGCCGGCTGCGTCATTGGCAAAGGTGG
ACAAAAGATCAAGGAGATCCGCGATCGCATCGGCTGCCGCTTTTTGAAGG
TCTTCTCGAATGTGGCACCACAGAGCACAGATCGAGTGGTGCAGACCGTT
GGCAAGCAGAGCCAGGTCATCGAAGCGGTTCGTGAGGTGATCACACGTAC
ACGGGACACTCCCATCAAGGGGGCGATACATAACTATGATCCTATGAACT
TTGACCGCGTATATGCCGATGAGTACGGTGGCTATGGCACTGGAAGTGGC
AGTACCCGTCCAAGTCAGCGGGGAAACAATCGTAACGGAGGAGGCGCTGG
AGGTGTTGCCGGCGGCGCAGCCGGTGGCAATGGTGGAGGATTCAATGCTG
GCGGTGCACGCGGCAATGCTGGCGGACGTGGCGGAGCTGATCGCTTTGGC
GGCGCCGCTGGTGGAGCTGTGGCCGGTGCTGGAATGGGGCAGCGCGACAA
TCCGTTCATTAATCCGTGGGCCAATGGCGGTGGCGGTGATGTAGATGGTT
TTGGGCAACAACGCTGGTGGTGCTGGTGGAATTTGCCGGTAACAGCTTTG
GGCGGTGGCGCCGGTGTACCAATTCAGGAGGTAGCTAGCTTTGGCAACCA
CCGGATTCGGAGTGGACCCAGCGACTTGGCGGAAAATTCAGAAACCTTTG
GAAACGGGTCGCACGGTACTAA
FMO13702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bl-RF | 2078 | CG13425-RF | 208..1194 | 10..1002 | 4605 | 98.2 | Plus |
| bl-RE | 2101 | CG13425-RE | 206..1192 | 10..1002 | 4605 | 98.2 | Plus |
| bl-RC | 2127 | CG13425-RC | 257..1243 | 10..1002 | 4605 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20604696..20605316 | 376..1002 | 2570 | 95.9 | Plus |
| 2R | 25286936 | 2R | 20598597..20598694 | 278..375 | 490 | 100 | Plus |
| 2R | 25286936 | 2R | 20595568..20595663 | 10..105 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 20598452..20598525 | 206..279 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 20595758..20595814 | 106..162 | 285 | 100 | Plus |
| 2R | 25286936 | 2R | 20597545..20597591 | 160..206 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:40:56 has no hits.
FMO13702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:27 Download gff for
FMO13702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 255..1243 | 7..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:32 Download gff for
FMO13702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 255..1243 | 7..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:32 Download gff for
FMO13702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20595566..20595663 | 7..105 | 98 | -> | Plus |
| 2R | 20595758..20595814 | 106..162 | 100 | -> | Plus |
| 2R | 20597548..20597591 | 163..206 | 100 | -> | Plus |
| 2R | 20598453..20598525 | 207..279 | 100 | -> | Plus |
| 2R | 20598599..20598694 | 280..375 | 100 | -> | Plus |
| 2R | 20604696..20605293 | 376..978 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:27 Download gff for
FMO13702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16483263..16483319 | 106..162 | 100 | -> | Plus |
| arm_2R | 16485053..16485096 | 163..206 | 100 | -> | Plus |
| arm_2R | 16483071..16483168 | 7..105 | 98 | -> | Plus |
| arm_2R | 16485958..16486030 | 207..279 | 100 | -> | Plus |
| arm_2R | 16486104..16486199 | 280..375 | 100 | -> | Plus |
| arm_2R | 16492201..16492798 | 376..978 | 97 | -> | Plus |
