FMO13703.5prime Sequence
1061 bp (965 high quality bases) assembled on 2013-08-24
> FMO13703.5prime
TCAGTCGACATGTGGCGGGCTCAGCCAAGTCTCTGGATCTGGTGGATCTT
CTTAATCCTTGTTCCTTCCATCAGAGCTGTCTACGAGGATTATCGTTTGC
CCAGATCTGTGGAGCCTTTGCACTACAACCTGCGAATTCTCACACACCTA
AATAGCACCGATCAAAGATTCGAGGGATCTGTGACAATAGATCTTCTGGC
ACGGGAGACCACCAAGAACATCACCTTGCATGCGGCGTACTTAAAGATAG
ATGAGAACCGAACATCAGTTGTTTCTGGCCAGGAAAAGTTTGGAGTTAAT
CGAATCGAAGTGAATGAGGTGCACAACTTCTACATCCTGCACTTGGGTCG
GGAATTGGTAAAGGATCAGATCTACAAGTTGGAAATGCACTTCAAAGCCG
GGCTAAATGATTCCCAAAGTGGGTACTATAAAAGTAACTACACGGATATA
GTTACCAAGGAAGTTCATCACCTGGCGGTCACTCAGTTCTCACCCACATT
TGCCAGGCAGGCATTTCCCTGCTTCGATGAACCATCCTGGAAGGCGACCT
TTAACATAACCCTTGGCTATCATAAAAAATACATGGGATTGAGTGGCATG
CCTGTTCTCAGGTGTCAGGATCATGATAGTCTTACAAATTATGTATGGTG
CGATCACGACACTCTTCTAAGGACCTCAACCTATTTGGTGGCCTTTGCTG
TCCATGATCTGGAAAATGCCGCCACCGAGGAGAGTAAGACCAGCAATAGA
GTTATCTTTCGCAACTGGATGCAGCCGAAGTTGTTGGGTCAGGAAATGAT
ATCCATGGAATTTGCACCAAAGCTGCTCTCCTTCTATGAGAATTTATTCC
AAATTACTTTCCGCTGGCGAAAGTGACCAACTGACGTGCCCACTCACAGA
TTTACGCATGAGACTGGGGTCTGGTCACCTACAACGAGAAAGATGCCTCA
AATCAGCGATTATCCGCAGAACAGAGATAGTACTGCTCACGGTGCTCACG
AAATGGCCATCATTGTCGGAAGTGTCACAATGGATGTTGATGTATCTCCT
GGTTGAGAAGT
FMO13703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3502-RB | 3171 | CG3502-RB | 353..1376 | 8..1012 | 4655 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23346004..23346463 | 467..8 | 2300 | 100 | Minus |
| 2R | 25286936 | 2R | 23345400..23345721 | 938..624 | 1285 | 96.9 | Minus |
| 2R | 25286936 | 2R | 23345791..23345946 | 623..468 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:40:59 has no hits.
FMO13703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:30 Download gff for
FMO13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3502-RB | 348..1356 | 1..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:35 Download gff for
FMO13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3502-RB | 348..1356 | 1..994 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:35 Download gff for
FMO13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23345334..23345721 | 624..994 | 95 | <- | Minus |
| 2R | 23345791..23345946 | 468..623 | 100 | <- | Minus |
| 2R | 23346004..23346468 | 1..467 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:30 Download gff for
FMO13703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19232857..19233244 | 624..994 | 95 | <- | Minus |
| arm_2R | 19233314..19233469 | 468..623 | 100 | <- | Minus |
| arm_2R | 19233527..19233991 | 1..467 | 99 | | Minus |
