FMO13704.5prime Sequence
1085 bp (975 high quality bases) assembled on 2013-08-24
> FMO13704.5prime
TCAGTCGACATGTATACGCAACGTATGTTTGACATGTGGAGCAGCGTCAC
TTCGAAACTGGAAGCACACGCAAACAATCTCGGTCAAAGCAACGTCCAAT
CGCCGGCGGGACAAAACAACTCCAGCGGTTCCATTAAAGCTCAAATTGAG
ATAATTCCATGCAAAGTCTGCGGCGACAAGTCATCCGGCGTGCATTACGG
AGTGATCACCTGCGAGGGCTGCAAGGGATTCTTTCGAAGATCGCAGAGCT
CCGTGGTCAACTACCAGTGTCCGCGCAACAAGCAATGTGTGGTGGACCGT
GTTAATCGCAACCGATGTCAATATTGTAGACTGCAAAAGTGCCTAAAACT
GGGAATGAGCCGTGATGCTGTAAAGTTCGGCAGGATGTCCAAGAAGCAGC
GCGAGAAGGTCGAGGACGAGGTACGCTTCCATCGGGCCCAGATGCGGGCA
CAAAGCGACGCGGCACCGGATAGCTCCGTATACGACACACAGACGCCCTC
GAGCAGCGACCAGCTGCATCACAACAATTACAACAGCTACAGCGGCGGCT
ACTCCAACAACGAGGTGGGCTACGGCAGTCCCTACGGATACTCGGCCTCC
GTGACGCCACAGCAGACCATGCAGTACGACATCTCGGCGGACTACGTGGA
CAGCACCACCTACGAGCCGCGCAGTACAATAATCGATCCCGAATTTATTA
GTCACGCGGATGGCGATATCAACGATGTGCTGATCAAGACGCTGGCGGAG
GCGCATGCCAACACAAATACCAACTGGAAGCTGTGCACGACATGTTCCGA
AAGCAGCCGGATGTGTCGCGCATTCTCTACTACAGAATCTGGGCCAAGAG
GAACTCTGGCTGGACTGCGCCGAGAGCTTACACAAATGATACAGGACATA
ATCGATTTGCTAGCTCATACCGGGATTCATGCGCCTAAGTCAGGACGATC
AGATATACTGCTGAAGACGGCTCTTTGGACTGCGAATGTCGCATGTCAGA
ACTGCTGGATCTCTCAAGAACGCCGTCTCTACGGGACGTGATGCTGCCAG
AAGGTTCTACATTCGGAATGAAGATATGGCCTAAG
FMO13704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-RF | 7524 | CG33183-RF | 2048..3099 | 10..1048 | 4800 | 98 | Plus |
| Hr46-RH | 6071 | CG33183-RH | 2054..3105 | 10..1048 | 4800 | 98 | Plus |
| Hr46-RA | 6071 | CG33183-RA | 2054..3105 | 10..1048 | 4800 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10209880..10210113 | 367..134 | 1155 | 99.6 | Minus |
| 2R | 25286936 | 2R | 10209101..10209273 | 706..534 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 536..367 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10222477..10222606 | 139..10 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 952..809 | 525 | 96.6 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 810..706 | 480 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:41:02 has no hits.
FMO13704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:32 Download gff for
FMO13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RA | 2054..3020 | 10..970 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:36 Download gff for
FMO13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RA | 2054..3020 | 10..970 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:36 Download gff for
FMO13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10209101..10209270 | 537..706 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 368..536 | 100 | <- | Minus |
| 2R | 10209880..10210107 | 140..367 | 100 | <- | Minus |
| 2R | 10222477..10222606 | 10..139 | 100 | | Minus |
| 2R | 10208626..10208644 | 953..970 | 94 | <- | Minus |
| 2R | 10208706..10208852 | 810..952 | 96 | <- | Minus |
| 2R | 10208921..10209024 | 707..809 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:32 Download gff for
FMO13704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6096606..6096775 | 537..706 | 100 | <- | Minus |
| arm_2R | 6096131..6096149 | 953..970 | 94 | <- | Minus |
| arm_2R | 6096211..6096357 | 810..952 | 96 | <- | Minus |
| arm_2R | 6096426..6096529 | 707..809 | 99 | <- | Minus |
| arm_2R | 6096945..6097113 | 368..536 | 100 | <- | Minus |
| arm_2R | 6097385..6097612 | 140..367 | 100 | <- | Minus |
| arm_2R | 6109982..6110111 | 10..139 | 100 | | Minus |
