FMO13706.5prime Sequence
1069 bp (961 high quality bases) assembled on 2013-08-24
> FMO13706.5prime
TCAGTCGACATGTCGTACCCGCCGCGGGCGCCCATGCCGCCCTTCATGAA
TACAGCCATACCGCCGCCGCACATAATGCAGAACATGGCCAAGCCGCCGA
GGAGCTTCCGTAACTCGGCCACCATTAGTTCACAGCCGACAGTATACCAA
CGTCCGCCGGAGCCGCAACCACAGTTCCGCGGACCCATCATTACCGTCTT
CGTGGGCAACATCAGCGAACGCGTCCCGGAGGCACTGCTCAAACGCATCC
TGAACGCTTGCGGCGTGGTAATCAATTGGAAACGGGTGTCCACATTCGGC
TTCTGCGAATTTGACGGACCTATTGCGGCAATGCGAGCCGTTCGCCTGCT
CAGCGAGATGGAAATCGATGGCAAGAAGCTGGTAGCCAAGGTAGATGCCA
AGAACAAGGTTCTCATCGAGGATTACAAGGAGCAGGAGTGCAAGAACGGC
GATCGTTCCAACCCAGTGGACGAAAAGACCGAGGACGAGTTCGCCATTGC
CCAGATGCACGAATTCCTGGAAGAGCACAAGCACGAGTTCGAAGGATTCG
ATAGCAGCAGTCGCGCCGATTTGTACGGCAGCGCCAATCGCAATAAGAAG
ACACGCCGCGAGGAAGACATAAAGATGAAGGTGCTAAGCGAAAATACCCT
GGAGGAAGAAAAGCGCAACTTGATTAGCAGCGAGATAGGCAAATTCCGTA
TGCGTGCGGAGGAAGACGAGCACCGCAAAGAGCTGGAGAAGGAGAAAGGA
AAAGGAGAAGCTTGCGGCCAGCAAGGGAGAACGAGCGCAAAAAGCAGCGC
GAAATGGAGCGAATGTCGTCGACCAGCAAGTCTGGCAGCTCATCGACAGC
GGGCCGCCAGTTCCTCCAGCGCTACAGCCACCTCTTCGACACCCGCCGCG
ATGGGGCTGACATGTCGGATAAGACAGACAAGATCAGTCGCTGTTGTGAT
CACGAAACAGTTAGAGTCAAAGGAATCTGCCTCCTCCACGGACGCAGAAG
TCGTCGTCGGCTGCATCGGAGAATAAACACAGGAAGGGGGCCGCTCTTGA
CTCAAAGAGAAACCGGTGG
FMO13706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4119-RB | 3857 | CG4119-RB | 355..1404 | 10..1057 | 4800 | 97.9 | Plus |
| CG4119-RA | 3697 | CG4119-RA | 292..1341 | 10..1057 | 4800 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5667210..5667914 | 315..1014 | 3015 | 98 | Plus |
| X | 23542271 | X | 5666557..5666798 | 73..314 | 1210 | 100 | Plus |
| X | 23542271 | X | 5666406..5666472 | 10..76 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:41:10 has no hits.
FMO13706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:36 Download gff for
FMO13706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4119-RA | 286..1321 | 2..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:39 Download gff for
FMO13706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4119-RA | 286..1321 | 2..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:39 Download gff for
FMO13706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5666400..5666468 | 2..72 | 94 | -> | Plus |
| X | 5666557..5666798 | 73..314 | 100 | -> | Plus |
| X | 5667210..5667934 | 315..1037 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:36 Download gff for
FMO13706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5560433..5560501 | 2..72 | 94 | -> | Plus |
| arm_X | 5560590..5560831 | 73..314 | 100 | -> | Plus |
| arm_X | 5561243..5561967 | 315..1037 | 97 | | Plus |
