FMO13707.5prime Sequence
1047 bp (943 high quality bases) assembled on 2013-08-24
> FMO13707.5prime
TCAGTCGACATGCTTAAGCTTGTGCAATACATAGCCCCCCGGGTGGGCGG
CGCCACGCCCCGACCGACTGCCTGCGGCTGGGGCAACTTGCTATTGATTT
CCCCGAGAAGTGGCGCGAGCTCCGAGAAATGTATAACGCAACGTCGCCAT
TTTCTTTTCTCCTCCGCCAGCAGCAGCGGCACTTTCGCTTCTTCTTCTTC
GCTCTGCACCGAACAACGACAACAGTTCCACGGGAGTCGCAGGAATCGTG
AGACAATACTGTTCCCAAGCACATATAGTAGTCTCCAAGCTCAGTCGCAG
CGTGCGTTTCGAGACAGCTCGAAACCAGATTCAGACGACTACGTAGATTC
CATCCCGAAAGCAGAGCAGCGGACGAGGACGAGGAAATCGCTTTTCAACG
ATCCCGACGAAAGAACTGAGGAAATCAAAATTGAAGGAGTAATGGCACCA
CACGATCGCGACTTTGGTCACAGTGGACGTGGCGGTCGCGGAGGCGATCG
AGGCGGCGATGATCGGCGAGGAGGCGGCGGCGGAGGCAATCGCTTCGGTG
GCGGCGGTGGCGGTGGCGATTACCACGGCATAAGGAATGGACGCGTCGAG
AAGCGACGCGATGACCGCGGAGGCGGCAACCGATTTGGAGGTGGTGGTGG
ATTCGGGGATCGCCGAGGAGGAGGTGGCGGCGGCAGCCAAGACCTCCCCA
TGCGTCCGGTCGACTTCTCCAACCTGGCTCCCTTCAAGAAGAACTTTTAC
CAGGAGCACCCTAACGTAGCAAACCCGATCGCCCTACGAAGTTCAGAGGT
ATCGCGAAGAGCAGGAGATCACCGTGCGCGGACAAGGTGCCCGAACCCCC
ATCCAGGACTTCTTCGAGGTCCATCTGCCCGACTACGTCATGAAGGAGAT
CCGGCGGACAGGGCTACAAGGTCCCCACTCGTTATCCAAGCGCAGGGCTG
GGCCTATCCGCCATGAAGAGGCTCGAACTTCGTCCGTCATTGCCAAGACG
GGATCCGGGAAAGACCCCTGGGGCTACTTCCTGCCCGGCTTATTGTT
FMO13707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RA | 2995 | CG10279-RA | 104..1118 | 10..1037 | 4710 | 98.1 | Plus |
| Rm62-RH | 2760 | CG10279-RH | 28..883 | 169..1037 | 3915 | 97.7 | Plus |
| Rm62-RM | 3411 | CG10279-RM | 23..875 | 172..1037 | 3900 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004572..6005126 | 1008..444 | 2240 | 96.8 | Minus |
| 3R | 32079331 | 3R | 6008036..6008470 | 444..10 | 2175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:41:23 has no hits.
FMO13707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:38 Download gff for
FMO13707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..1125 | 10..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:42 Download gff for
FMO13707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..1125 | 10..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:42 Download gff for
FMO13707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6004538..6005126 | 444..1047 | 96 | <- | Minus |
| 3R | 6008037..6008470 | 10..443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:38 Download gff for
FMO13707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1830260..1830848 | 444..1047 | 96 | <- | Minus |
| arm_3R | 1833759..1834192 | 10..443 | 100 | | Minus |
