FMO13708.5prime Sequence
519 bp (519 high quality bases) assembled on 2013-08-24
> FMO13708.5prime
TCAGTCGACATGGACATATCTGGTGGGAATACGTCGCGCCAGCCCCAAAA
GAAGTCCAACCAAAACATCCAGGTGTATGTGCGCGTCAGACCCCTTAATT
CTCGGGAACGTTGCATCCGCTCGGCCGAAGTCGTGGATGTGGTCGGACCA
CGGGAAGTGGTCACCCGCCACACGCTGGACTCCAAGCTCACCAAGAAGTT
CACCTTTGACCGCAGTTTTGGCCCCGAGTCCAAGCAGTGCGATGTCTACT
CCGTCGTGGTGTCTCCGCTGATCGAGGAGGTCCTCAATGGCTATAACTGC
ACGGTGTTTGCTTATGGCCAGACGGGCAACAATCTGCGTCCGCCCAAGTC
ACTTTACATCGAGGTGCGCTGCATGGAGGACTATGGGAAGTTCGAGCTGG
ACGACGGCGAGGTGATCCACCTGAAGAAGAACAGCCAGCACTATCTGCCC
CGAGCTCAGGTGGAGTCTCTCGTGAGGCAGGGCATTCTTCACCACATAGC
CGCAAGCTTTCTAGACCAT
FMO13708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32318-RA | 785 | CG32318-RA | 291..782 | 10..501 | 2460 | 100 | Plus |
| Klp61F-RA | 3871 | CG9191-RA | 271..589 | 10..328 | 1595 | 100 | Plus |
| Psf1-RA | 692 | CG9187-RA | 435..609 | 327..501 | 875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1246076..1246489 | 501..88 | 2070 | 100 | Minus |
| 3L | 28110227 | 3L | 1245256..1245496 | 328..88 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 1247069..1247243 | 501..327 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 1245561..1245640 | 89..10 | 400 | 100 | Minus |
| 3L | 28110227 | 3L | 1246554..1246633 | 89..10 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:41:36 has no hits.
FMO13708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:39 Download gff for
FMO13708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32318-RA | 283..785 | 1..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:43 Download gff for
FMO13708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32318-RA | 283..785 | 1..502 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:43 Download gff for
FMO13708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1246554..1246641 | 1..89 | 95 | | Minus |
| 3L | 1246076..1246487 | 90..501 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:39 Download gff for
FMO13708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1246076..1246487 | 90..501 | 100 | <- | Minus |
| arm_3L | 1246554..1246641 | 1..89 | 95 | | Minus |
