FMO13711.5prime Sequence
1073 bp (966 high quality bases) assembled on 2013-08-24
> FMO13711.5prime
TCAGTCGACATGGATATGATGACAGCTACGTGGATGCTGTGTCTTGTTCT
CTGCTCCACGGCGATGGCGACGGAGGAGGAATCGGGCAGTGGACTGTTCA
ACGTCACCGGGAATCCCTTGGATACAGAAGCTGCTCCAAAACTGCCCAGC
GAAGTGCAGAAAGCTGTTTGCACTGTGACTGCGGGGGAGGTGAAGGCATC
TGCCGAGGCTGTCACCACAAAAACCCTTAAGGGAGTGTGTGGATCAGATG
AAATGAACATGGCCTTCCGAAGTCTGGAGAACAAGCTCTACGAAGAGCTT
CGTGTAATGAAACTGATTTTGGTGCACTTAGCCAAGGCGAATGGACTTAA
GCTCAATACAGCCTTTTCCCCATCTGTGACCACTCCACCTCCGACTATGA
GGCCAATCACTAGCGCTGCGGTGCCGCCAATCTTCAAGCCAATTGATCCT
CCCAAGAAGCTTTCCAATTCCACCAATTCGAAAGCCGAAGAGAACGAAGT
TGCTCCAGACTTCGGACTTAAGAAGACTCCTACTCTGAAAAACTTGGATT
CGAACGCAAATCTTGGAGCTCGTGAAAATGAAGTCGATAAGTTCAATAAT
ACTGTACTGGCCGATCAGGATGTAAAGTTGTTCACTTACTATTGGAAGTT
GGAGAACGTTACGGAACTTATCAAAGCACCTAAATTGGCCACTGTCAGTA
GTCCGATATTCAGCTTTAAAGGCAAGTCCCTGCAACTAAAGTGCACTTTC
CATCACATGAATCGCGAACTGCTGAACCTGCAACTGGGATACGGCGTCTT
TAACCCAAAATCTAAAACTGGCCAAAGCAACAACATCTTGTTAGAAATGG
ACGGAATTTTCCAGACACTAAGTGGACCGAAGATATCCAGCTGAAGGCAC
AGATTCCATACTGGATCAAGTCACACCCAACGAGACGCAGATCCTCAGTT
CACAGGTGCTGACAGCTGGACCCGGGATTCTCTATCCAAACAGTGTGCTC
CTCGTTAGCTCCTACATCAGCAGAACGCGCTGTGATTCCATTCTTTTATT
GGCAAGCTTCTGACCATTCGGTT
FMO13711.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13247-RA | 1305 | CG13247-RA | 200..1250 | 10..1049 | 4800 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20370807..20371284 | 245..722 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 20370512..20370749 | 10..247 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 20371347..20371673 | 716..1033 | 1030 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:40:48 has no hits.
FMO13711.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:25 Download gff for
FMO13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13247-RA | 196..1250 | 4..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:29 Download gff for
FMO13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13247-RA | 196..1250 | 4..1049 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:29 Download gff for
FMO13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20371353..20371691 | 722..1049 | 93 | | Plus |
| 3L | 20370508..20370749 | 4..247 | 98 | -> | Plus |
| 3L | 20370810..20371283 | 248..721 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:25 Download gff for
FMO13711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20363608..20363849 | 4..247 | 98 | -> | Plus |
| arm_3L | 20363910..20364383 | 248..721 | 100 | -> | Plus |
| arm_3L | 20364453..20364791 | 722..1049 | 93 | | Plus |
