FMO13714.5prime Sequence
853 bp (853 high quality bases) assembled on 2013-08-24
> FMO13714.5prime
TCAGTCGACATGGCTGATCCGAACGCAGAGTCCTGCTGCCAGCCCCTAAA
GGAGGAGTTTCAGCGGTCAAAATTCTCGCTGCACCATGAAGATCCTGGTG
TCTTCTGCCGATCACAATGGCAGAACGGAGAGCGGAATTTAATCTGGGTT
CTATACCGATGGCTTCTGGCTGCTTTCTTTGCCGCTGGAGTCATTGGCAG
CATGATGCAGGATTTCAATGGCGGTCGATGGTTTATTTATCTCACGGATT
GGGGATTTACACTGTGTCTATTTACCTGCACTTACGGGGCTGTAATCGCT
ACTATTTACTACTTCAATCAATCTTATTTTGCTCCCGGACATTGTGCTCT
GAAAATTTACTGGATCTCACACTACACCACTTCGGTACTATCCATGTTGA
TTACCACCGTCTTCTGGGCAGCTCTATCATTAACCATGCCAGAAGTGGCA
GGTGAGCTTTACAACTTGTGGTGCCATGCATTCAACTCGATCTGCATGGT
CTTCGACTGCTTTATGGTGGCTTATCCTAACCGTCTTATGCACTTTGTGT
ATCCCTTTTCGGTGGTGCTCATATTCTTGATGCATTCCCTTATTTACTAT
TGGGCCGGCGGAACCGACATCGACGGAAATCGCTTCATCTACTTCGCCCT
GGACTGGGCTCGACCTGGTCTGGCGATTGGATTCGTTTGCGCGAGTTTGG
CATTGATCTGTTGCTTTTCCCTCGTGGCCTTTGGAATTTACAGGTTGCGG
ATGTCAGTGTACAACTGTTGTGGCAAAAGGAAGGAGGAAGCACCAGCCTT
AAAAGCTACGCCCAATGAAATCATCTCCAACTGTTGCAAGCTTTCTAGAC
CAT
FMO13714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17906-RA | 971 | CG17906-RA | 73..897 | 10..835 | 4105 | 99.9 | Plus |
| alien-RD | 3172 | CG9556-RD | 2206..2527 | 331..10 | 1610 | 100 | Minus |
| alien-RD | 3172 | CG9556-RD | 1452..1660 | 830..621 | 1025 | 99.5 | Minus |
| alien-RB | 2321 | CG9556-RB | 1452..1660 | 830..621 | 1025 | 99.5 | Minus |
| alien-RD | 3172 | CG9556-RD | 1715..1905 | 620..430 | 940 | 99.5 | Minus |
| alien-RD | 3172 | CG9556-RD | 1964..2066 | 433..331 | 515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8994463..8994784 | 10..331 | 1610 | 100 | Plus |
| 2L | 23513712 | 2L | 8995330..8995543 | 621..835 | 1025 | 99.5 | Plus |
| 2L | 23513712 | 2L | 8995085..8995275 | 430..620 | 940 | 99.5 | Plus |
| 2L | 23513712 | 2L | 8994924..8995026 | 331..433 | 515 | 100 | Plus |
| 2L | 23513712 | 2L | 8992090..8992384 | 37..331 | 440 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8992850..8992974 | 434..558 | 265 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:41:56 has no hits.
FMO13714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:46 Download gff for
FMO13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17906-RA | 1..828 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:50 Download gff for
FMO13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17906-RA | 64..901 | 2..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:50 Download gff for
FMO13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8994454..8994784 | 2..331 | 98 | -> | Plus |
| 2L | 8994925..8995026 | 332..433 | 100 | -> | Plus |
| 2L | 8995089..8995275 | 434..620 | 100 | -> | Plus |
| 2L | 8995330..8995547 | 621..840 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:46 Download gff for
FMO13714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8994454..8994784 | 2..331 | 98 | -> | Plus |
| arm_2L | 8994925..8995026 | 332..433 | 100 | -> | Plus |
| arm_2L | 8995089..8995275 | 434..620 | 100 | -> | Plus |
| arm_2L | 8995330..8995547 | 621..840 | 98 | | Plus |
