FMO13727.5prime Sequence
606 bp (341 high quality bases) assembled on 2013-08-24
> FMO13727.5prime
TCAGTCGACATGAAGGCTTTCATCGTTCTGGTTGCCCTGGCTCTGGCCGC
TCCTGCTCTTGGTCGCACCATGGACCGTTGCTCCCTGGCCCGGGAGATGT
CCAACCTGGGCGTTCCTCGTGACCAATTGGCTCGTTGGGCCTGCATTGCC
GAGCACGAGTCCTCCTACCGCACCGGAGTGGTTGGTCCCGAGAACTACAA
CGGCTCCAACGACTACGGAATCTTCCAGATCAACGACTACTACTGGTGCG
CTCCTCCCAGCGGTCGCTTCTCCTACAATGAGTGCGGGTTGAGCTGCAAT
GCCCTCTTGACCGACGACATCACCCCACTCCGTCCCGTTTGTGCCCAGAA
GGTCCTCAGCCCAGCAGGGATGGGCCCGCCCTGTTCCACCTGGGACCTAC
TGCAGCGGATGGTTGCCGTCCATCGATGACTGCTTCCCCAAGCTTCCAAG
ACCATTCGTTTGGGGCGCCGGGCCCGGTAAGGGGTCATAATCTTAATCAT
AATCTAAATCATAATCCCAACTAGCCAAGGAATCCTGGTCTTGACTAGGC
TTGGAATCCCACCAATAAAAACGCCGGGGGCACCGAGCGTCTGAACAATC
CAGATG
FMO13727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LysB-RB | 611 | CG1179-RB | 22..443 | 8..436 | 1925 | 97.7 | Plus |
| LysB-RA | 486 | CG1179-RA | 22..443 | 8..436 | 1925 | 97.7 | Plus |
| LysD-RA | 480 | CG9118-RA | 19..439 | 9..436 | 1695 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1207392..1207813 | 8..436 | 1790 | 97.2 | Plus |
| 3L | 28110227 | 3L | 1212952..1213371 | 10..436 | 1555 | 93.7 | Plus |
| 3L | 28110227 | 3L | 1210758..1211178 | 436..9 | 1545 | 93.5 | Minus |
| 3L | 28110227 | 3L | 1210484..1210726 | 9..251 | 900 | 91.4 | Plus |
| 3L | 28110227 | 3L | 1227770..1228191 | 8..436 | 655 | 80.6 | Plus |
| 3L | 28110227 | 3L | 1218365..1218607 | 324..82 | 555 | 81.9 | Minus |
| 3L | 28110227 | 3L | 1194980..1195241 | 322..61 | 455 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:42:45 has no hits.
FMO13727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:07 Download gff for
FMO13727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysB-RA | 22..446 | 8..441 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:06 Download gff for
FMO13727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysB-RA | 22..446 | 8..441 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:06 Download gff for
FMO13727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1207392..1207816 | 8..441 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:07 Download gff for
FMO13727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1207392..1207816 | 8..441 | 97 | == | Plus |
