FMO13728.5prime Sequence
621 bp (621 high quality bases) assembled on 2013-08-24
> FMO13728.5prime
TCAGTCGACATGTGCTCCCAACTGTTCGCATTTCTGCTCCTCCTTTTGAC
CGCTTTTGTGACGGGTAGAAGTACTCCACCGGCGTTGGATGAAGACTGTG
AACTGAATTCTGTAGATACAATGCATGATTTCTGCTGCGACCTGCACGAC
GAGAGTCCCCAGTTTAGCGACTGCCAGATGGAGTGGCACGAAAAGATTCC
ATACGAGACGGATGAAGAGGAGCAGACGTACATGTTTTGCACCGCAGAGT
GCAGTTTCAACAGTACGAACTTCTTGGGCAGGGACCGCCGTTCACTGAAT
CTCAATGAGGTAAAGGAGCACTTGGAAAGCGACCTGGTCAACGATGCGGA
CATTAAGCTTCTCTATGACACCTATGTCAAGTGCGACAAGCATGCGCTCT
CACTGATGCCGCACAAAGGTGTGAAGCAGCTATCCAAACGTCTTTCGCGT
CTTGGCTGTCATCCGTATCCCGGACTGGTCCTCGAGTGCGTGGCCAACGA
GATGATCCTGCACTGTCCCACCAAGCGCTTCCGTCAAACAGCCCAGTGCG
AAGAGACACGCAATCATTTGAAGCAATGTATGCAGTATCTAAAGTACAAG
TCCGCAAGCTTTCTAGACCAT
FMO13728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp46a-RA | 597 | CG12905-RA | 1..594 | 10..603 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10311175..10311384 | 603..394 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 10311442..10311598 | 394..238 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 10311650..10311764 | 237..123 | 575 | 100 | Minus |
| 2R | 25286936 | 2R | 10311910..10312023 | 123..10 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3290..3332 | 249..207 | 107 | 72.1 | Minus |
FMO13728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:08 Download gff for
FMO13728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp46a-RA | 1..597 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:07 Download gff for
FMO13728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp46a-RA | 1..597 | 10..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:07 Download gff for
FMO13728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10311650..10311763 | 124..237 | 100 | <- | Minus |
| 2R | 10311910..10312023 | 10..123 | 100 | | Minus |
| 2R | 10311175..10311383 | 395..603 | 100 | <- | Minus |
| 2R | 10311442..10311598 | 238..394 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:08 Download gff for
FMO13728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6198680..6198888 | 395..603 | 100 | <- | Minus |
| arm_2R | 6198947..6199103 | 238..394 | 100 | <- | Minus |
| arm_2R | 6199155..6199268 | 124..237 | 100 | <- | Minus |
| arm_2R | 6199415..6199528 | 10..123 | 100 | | Minus |
