Clone FMO13729 Report

Search the DGRC for FMO13729

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:137
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13202-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13729.5prime Sequence

270 bp (270 high quality bases) assembled on 2013-08-24

> FMO13729.5prime
TCAGTCGACATGGATAACTGGAAGATAACCGCGGAGGAGCTTATCCGTCT
GCGGGAGAGCTGCTTGCAGTGCATCCGTGATGGAGAACTCTATGAACTGC
GCAACGATGCCAAACTTAGGGCTGTTTATAGCACTCAGAACTACGAAGAA
TTCAAGAACATAGTGGATGCGGCTCATCTTCGTCCAGTGACCAAGGGCGA
CAAGGCGAATTTTAAGACGAAGAATCGACTATGGAACTCGGCGGCCCGGG
ATGCAAGCTTTCTAGACCAT

FMO13729.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13202-RA 426 CG13202-RA 125..371 6..252 1235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11356326..11356476 156..6 755 100 Minus
2R 25286936 2R 11356169..11356269 252..152 490 99 Minus
Blast to na_te.dros performed on 2014-11-28 23:42:51 has no hits.

FMO13729.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:10 Download gff for FMO13729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13202-RA 122..377 1..261 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:08 Download gff for FMO13729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13202-RA 122..377 1..261 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:08 Download gff for FMO13729.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11356163..11356265 156..261 96 <- Minus
2R 11356327..11356479 1..155 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:10 Download gff for FMO13729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7243668..7243770 156..261 96 <- Minus
arm_2R 7243832..7243984 1..155 98   Minus