FMO13732.5prime Sequence
1056 bp (948 high quality bases) assembled on 2013-08-24
> FMO13732.5prime
TCAGTCGACATGACACGCATTACTTGGAGAGGTCACTCCACTCAGGAGTT
GCTATCGATTTTGCGGCTTCGTTGGTCATATATGAAGCACTGCTGGCACT
CCTTAACTTTCAACGCCCACATGAACTCCTCCTACGCCTCGGACGTCTGC
CTGACCCCTATTTTTTGGTTTGTGGACAACTATACTCACTGCCTAGGACC
GTTTTTTGTGGTTGGCGTGGCTGCCTTGACGACTTCAGTCGTTAGTATTG
CCTATTGGATTGGCTTGCCCTTTTGGTGGGCCAAAAGTCAGTTGGTGACC
TACTTCCTCCTCATTGTGGGCAACTGGCTGCTGCTCAATGTGGTTTTCCA
CTACGTTATGGCTGTGATCACGCCGGCTGGTCATCCGCCAGAGGGCGTGT
CCCTGGTAGAAGCGGTTAGCATGTGCGGCAAGTGCATAGCTCCCAAACCA
CCGAGGACTCATCACTGCTCCATCTGCAATCGCTGCATACTTAAGATGGA
TCACCATTGTCCTTGGCTCAACAATTGCGTGGGTTATGGTAATCATCGGT
ACTTCTTCCTCTACATGACGTACACCACTCTGGGTTGTCTGTTTCTTATT
TTGTTTGGCTTGGAGATTGGCCACAAATACCTGTGGCTGGATCATGGTGA
AAACTGGACGGAAATTGAGCCCTTGGAGGGGCAGCCAGTCAAGTTTAACC
TCAGTGGACACATCATTCCAGTGACACATCCGAATGAGTATGATGAATTT
GTGCTGCCTCCAGCCGTGCACAATCTTCCAACACCCATTGTGGACACAGA
TGCCGCTTCGCCCGGTCGACGACGAGCGCTTGGTTCATGGCCGTTCACAA
ACGTTGCCGTGGTCTTGGCTCTCGGTAGCCTCTCATCTGGCACGCCAAGC
TATCACTCGTGCGAGACAGTGTGAGCTCCCATCAACGAGCTGACGAAAAC
CGCACTCAGCACCACGCATTTATATAATCCTTATAACTTGGCCACCAAAG
ACCTGAAGCTGTTCTTGGGTCTTGTGCGAGGCAGATTCTTGGCGACTGTG
CTGCTT
FMO13732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5880-RA | 1526 | CG5880-RA | 139..1203 | 10..1056 | 4715 | 97.3 | Plus |
| CG8314-RA | 1280 | CG8314-RA | 541..616 | 458..533 | 200 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27117212..27117522 | 201..511 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 27117583..27117794 | 512..723 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 27117858..27118190 | 723..1040 | 765 | 91 | Plus |
| 3R | 32079331 | 3R | 27117005..27117152 | 54..201 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 27116883..27116926 | 10..53 | 220 | 100 | Plus |
| 2R | 25286936 | 2R | 15990486..15990561 | 533..458 | 200 | 84.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:42:59 has no hits.
FMO13732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:16 Download gff for
FMO13732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5880-RA | 139..1203 | 10..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:13 Download gff for
FMO13732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5880-RA | 139..1203 | 10..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:13 Download gff for
FMO13732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27117005..27117152 | 54..201 | 100 | -> | Plus |
| 3R | 27117583..27117794 | 512..723 | 100 | -> | Plus |
| 3R | 27117213..27117522 | 202..511 | 100 | -> | Plus |
| 3R | 27116883..27116926 | 10..53 | 100 | -> | Plus |
| 3R | 27117859..27118209 | 724..1056 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:16 Download gff for
FMO13732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22942605..22942648 | 10..53 | 100 | -> | Plus |
| arm_3R | 22942727..22942874 | 54..201 | 100 | -> | Plus |
| arm_3R | 22942935..22943244 | 202..511 | 100 | -> | Plus |
| arm_3R | 22943305..22943516 | 512..723 | 100 | -> | Plus |
| arm_3R | 22943581..22943931 | 724..1056 | 91 | | Plus |
