FMO13733.5prime Sequence
847 bp (847 high quality bases) assembled on 2013-08-24
> FMO13733.5prime
TCAGTCGACATGTCGCGAAATCAATTGCCGGATTCGTCGTCTTCACCGCC
CATTAGCCATTTACCCTTCCACAATTTCGACGATGATCTGATTAACGATT
TGCCCTCCTGCATTTATGCGGGTCAGCATCAAGGCGGAGGCGCCACCGGT
GGAGGTGGTGGATCGGGAGGTGGCGGTGGCAGTTCTGGGCTGCGTCTGAG
CTCCAACAACCTGCGTCACATCCAGCAGCATTATATGCAACATAGCGGAG
AAAATCTGCTCGACTCCTCTACCAATCCAATGGGGGTGCACAATTCCGGG
GGAGGAGCACCCTTAATGTGCAACAGCCCCAGTGCCAGCAGCAGTGGAGG
AGGGTGCGGCAACGCAGGATCTGCTACTCCTGGCGGTGCAGGTGGTCCCA
ATCCTGGATATGGATCCGTGGGAGCTGCAACTGCGTCCAGCTACAAAATG
CAGCGACAGGCGGCCAATGTGCGGGAAAGGAAACGCATCCAGAGTAGCAT
CAATTCGGCTTTCGATGAGCTAAGGGTCCATGTACCCACCTTTCCGTACG
AGAAACGTCTGAGCAAGATCGACACTCTGCGGCTTGCCATCGCCTATATA
TCTCTGCTCCGTGAGGTACTACAAACCGACTACGATCCCCTAACCTATGT
GGAGAAGTGTCTGCGCGGAGAGATCAAAGCGGATAGGGCTAATTGGAATA
CGAGTGATCTCACAGCTCGTCTGTCGTGATCAACTGGGAGAACCTCGGAG
TACATCCTGTATGCGAACCCTGCTTACCTCGTTGGCTCTCTCCTCGGAAC
CCATGTGCGGAGCCTCATTGCGGAATGCCGGCAAGCTTTCTAGACAT
FMO13733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer2-RB | 1336 | CG5952-RB | 93..914 | 10..830 | 4025 | 99.5 | Plus |
| Fer2-RE | 1333 | CG5952-RE | 93..911 | 10..830 | 3970 | 99.1 | Plus |
| Fer2-RC | 1351 | CG5952-RC | 93..929 | 10..830 | 3865 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16150307..16150552 | 494..249 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 16149971..16150184 | 706..493 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 16150614..16150809 | 250..55 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 16149791..16149916 | 830..706 | 470 | 96.9 | Minus |
| 3R | 32079331 | 3R | 16151174..16151220 | 56..10 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:43:02 has no hits.
FMO13733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:18 Download gff for
FMO13733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2-RB | 118..950 | 3..838 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:15 Download gff for
FMO13733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer2-RB | 88..920 | 3..838 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:15 Download gff for
FMO13733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16150614..16150807 | 57..250 | 100 | <- | Minus |
| 3R | 16151174..16151225 | 3..56 | 92 | | Minus |
| 3R | 16150307..16150550 | 251..494 | 100 | <- | Minus |
| 3R | 16149785..16149915 | 707..838 | 94 | <- | Minus |
| 3R | 16149971..16150182 | 495..706 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:18 Download gff for
FMO13733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11975507..11975637 | 707..838 | 94 | <- | Minus |
| arm_3R | 11975693..11975904 | 495..706 | 100 | <- | Minus |
| arm_3R | 11976029..11976272 | 251..494 | 100 | <- | Minus |
| arm_3R | 11976336..11976529 | 57..250 | 100 | <- | Minus |
| arm_3R | 11976896..11976947 | 3..56 | 92 | | Minus |
