FMO13734.5prime Sequence
1096 bp (984 high quality bases) assembled on 2013-08-24
> FMO13734.5prime
TCAGTCGACATGCTGCAAAATGTGTGCCGCGTGTGTGCCAGCAGCACGGA
CAACTCGAAATCGTTGAAACTATTTAACAGCGGCGCCTGCAAAGTGCTGC
AACAAATCAATTTGCTCACCGGTGTTCTGCTGCAATGCGAACCCGGTTTA
CCCGACTGGATGTGCGAGACCTGCCAGACGGATTTGAAAAGCGCCATATC
CTTTCGTGATCGCTGCTTGAGGAGTCAGAAGATCTTTGAAGAGTCGCTGG
TCAGGAATGAAGAGGACACATTCCGCTCCTCAGTTCGTCGCAGTGCCCGT
TCCCAAAGACAGCGGCATGAAGACACCGCTCCAAAGACGCCAGCAAGTCC
GCTGGAGGTAATGATTAAGCTGGAGAGCCTGAGCAATGGCGATGAGGAGG
ATGATGGCATCGATCACCTAGACTCCTGCAACGAAGCAGACATGGAGCTG
GCCATTAAAGCGATGTCCAGCTCTACCGAAGATGATGGAACTACCTCACC
GGTCAGATTGAAAAGAACCCGACGTCGGGGACTTAAGAAAGGCGGGAAAG
GTGAAAATCGCACAAAGGTTACGCTTCCAGTTTTCTTTTGCGATCAGTGC
GGCAACAATATTACAGGGAAGTCCTCCTTCGACCGTCACCTACGCAAACA
CAGCGGAATTAGGCCCTTTCAGTGCGAACTCTGCCCCGCCCGCTTCCTGT
CCTCCGGTGAGCTGAAAGGACACCAAGTGATGCACACTGGAGATCGCAAG
TTCCAGTGTCGTTACTGTGACCGCACCTACGTCAACTACAGTGGTCGCCT
GCGTCACGAGCGGACCCACACAAATGATCGACCCTTTATTTGTGCGCAGT
GCGGCAAGAGCTTTACCATTTCCTACATCCTCAGATCCACATGCTTATCC
ACACGGGCGAGCGCCTGTTCAGATGTGAGCTGTGCCATCGATCCTTTGCG
CGACCCACCCCACTTGAGACTCACTTCCGCCTCTAACACTCATAGCACAC
TTGGAGGAATTCGATGGCAGACGCGGGTGGGAGTTCAGCCTGTTCCACCA
TTCCCAGGTCAGCGGTTCCAGTTCAAGTCCTGACCCGGAAAGATGC
FMO13734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8159-RB | 1328 | CG8159-RB | 75..1125 | 10..1065 | 4925 | 98.4 | Plus |
| CG11762-RA | 1141 | CG11762-RA | 726..833 | 805..911 | 205 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8727109..8727657 | 129..677 | 2730 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8727726..8727971 | 678..922 | 1150 | 98.8 | Plus |
| 3R | 32079331 | 3R | 8726928..8727047 | 10..129 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 8728028..8728138 | 920..1030 | 295 | 88.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:42:31 has no hits.
FMO13734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:58 Download gff for
FMO13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8159-RB | 70..1130 | 4..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:59 Download gff for
FMO13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8159-RB | 70..1130 | 4..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:59 Download gff for
FMO13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8726923..8727047 | 4..129 | 97 | -> | Plus |
| 3R | 8727110..8727657 | 130..677 | 99 | -> | Plus |
| 3R | 8727726..8727971 | 678..922 | 98 | -> | Plus |
| 3R | 8728031..8728147 | 923..1041 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:58 Download gff for
FMO13734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4553753..4553869 | 923..1041 | 92 | -> | Plus |
| arm_3R | 4552645..4552769 | 4..129 | 97 | -> | Plus |
| arm_3R | 4552832..4553379 | 130..677 | 99 | -> | Plus |
| arm_3R | 4553448..4553693 | 678..922 | 98 | -> | Plus |
