FMO13738.5prime Sequence
714 bp (714 high quality bases) assembled on 2013-08-24
> FMO13738.5prime
TCAGTCGACATGGCCGATCATAACGAAGATGAAGCTGTTGGCGGTGACCT
AAACAACAATATAACAGCAAATGGGCAGGAGGAAGTGCGTCAGCCGGAGC
AGCCGCAGAACGAACTGCTGGACATGGTTTTCACGTTGGAAAGCGAAAAA
CAGGCACTACTAGAGGAGTCTCGCAAACGGATCGGAGCGCTCCGCAAAGA
CTTTGAGGAAGCCAAGGCGGAAAATGAGCGTTTAAAGCGGAGAGTGGTCC
AGTTGGAGCAGTCGCTCAAGCAGTCCGTCATGCTGGGCGGCACAGATGCT
CCCAAATCACGACAAGAGCAGGAGGAGCTGCTTCTAAAGGCCAAAACCCT
GCTGTTCGAGAAGACCAAGGTGAACAAACAGCAGGAGCAGCAGATATCAG
TGCTTAGGACACAAGTAGACTCGATTAAGGATGTGCTGCAGGTGACCAAG
GACATGTTGCAGCTAAAGACCGCCGAATGTGATCACACGCAGGCTCGTCT
GGAGAAGAGCCAGCAGTGGATCAAGGCGGAGCAAGACAAGTGTGTGCTCA
CGGAGAAGAAACTAGCCATCTCCAAAGGAGTGTATGACAAGCTGCGTTCG
GAGTACGACACCCAGTCACAGATATTCAAGGATCTTAAGTCCGCGTACGA
GCAGAAGGTCAAGGTTCTCACCAAGGCTTTGGCAGAAGCCAAGAAAGCAA
GCTTTCTAGACCAT
FMO13738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5376-RA | 812 | CG5376-RA | 74..760 | 10..696 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22488210..22488635 | 631..206 | 2130 | 100 | Minus |
| 3R | 32079331 | 3R | 22488684..22488882 | 208..10 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 22488085..22488152 | 696..629 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:43:20 has no hits.
FMO13738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:30 Download gff for
FMO13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5376-RA | 67..765 | 1..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:24 Download gff for
FMO13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5376-RA | 67..765 | 1..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:24 Download gff for
FMO13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22488080..22488150 | 631..703 | 95 | <- | Minus |
| 3R | 22488211..22488633 | 208..630 | 100 | <- | Minus |
| 3R | 22488685..22488889 | 1..207 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:30 Download gff for
FMO13738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18313802..18313872 | 631..703 | 95 | <- | Minus |
| arm_3R | 18313933..18314355 | 208..630 | 100 | <- | Minus |
| arm_3R | 18314407..18314611 | 1..207 | 98 | | Minus |
