FMO13741.5prime Sequence
1025 bp (983 high quality bases) assembled on 2013-08-24
> FMO13741.5prime
TCAGTCGACATGACCAACGCCATGGATATTGTGAAGAACGGCAGTGCCAA
CGGATCCGTGGATGGCAGCAATGATGAGTCGCGCACCAATTTGATTGTCA
ACTATCTGCCGCAAACCATGACGCAGGAGGAGATGCGATCGCTCTTCTCC
AGCATCGGTGAGCTCGAGAGTTGCAAACTGGTGCGTGATAAAGTCTCAGG
TAATTTGGTCTTGCCAGCATCGTTGACCGCTCTCAATCCGGCATTGCAGC
AAGGTCAGAGTCTGGGCTATGGATTTGTTAATTACGTCAGGGCCGAGGAT
GCTGAGAAGGCTGTGAACACCCTGAACGGCCTGCGTTTGCAGAATAAGGT
TATTAAAGTATCATATGCCCGTCCAAGCTCAGAATCTATTAAGGGTGCTA
ATTTATATGTATCGGGTCTTCCGAAAAATCTATCACAACCAGACTTGGAG
GGGATGTTTGCTTCGTTTGGCAAAATAATTACATCTCGTATACTCTGTGA
TAATATTTCTGGTCTATCGAAGGGTGTCGGTTTTATTCGCTTCGATCAGC
GCAACGAAGCCGAGCGAGCCATCCAGGAGTTGAATGGCAAGACCCCGAAA
GGATATGCCGAACCGATCACCGTCAAGTTCGCCAACAATCCGAGCAATAG
CGCCAAGGCTCAAATTGCCCCGCCCCTTACCGCCTACTTGACACCACAGG
CGGCAGCGGCCACTCGCCGTTTGGCCGGAGCTCTGCCCTCCGCCGGTCGC
ATTAGGTACTCACCGCTGGCTGGCGATCTATTGGCCAATTCGATTTTACC
GGGAAATGCCATGACTGGATCGGGATGGTGCATATTCGTCTATAACCTGG
CCCCGGAGACCGAGGAGAACGTGCTGTGGCAGCTATTCGGGCCATTCGGT
GCCGTTCAATCGGTGAGGTGATCCGGGATCTGCAGACCAGCAAGTGCAGG
GATTCGATCGTGACCATGACCACCTACGATGAGGCCGTGGTGGCCAATCA
GTCGCTGAAATGGTATTCCCCTGGG
FMO13741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fne-RE | 4682 | CG4396-RE | 2410..3428 | 10..1025 | 4885 | 98.9 | Plus |
| fne-RH | 7579 | CG4396-RH | 1582..2600 | 10..1025 | 4885 | 98.9 | Plus |
| fne-RG | 7113 | CG4396-RG | 1116..2134 | 10..1025 | 4885 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12943191..12943452 | 252..513 | 1295 | 99.6 | Plus |
| X | 23542271 | X | 12943512..12943758 | 511..757 | 1235 | 100 | Plus |
| X | 23542271 | X | 12945162..12945423 | 752..1009 | 1100 | 97.3 | Plus |
| X | 23542271 | X | 12942658..12942856 | 10..208 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 2963040..2963125 | 826..911 | 250 | 86 | Plus |
| X | 23542271 | X | 12943085..12943132 | 208..255 | 240 | 100 | Plus |
| 2L | 23513712 | 2L | 2962579..2962720 | 505..646 | 230 | 77.5 | Plus |
| X | 23542271 | X | 518722..518808 | 162..76 | 195 | 81.6 | Minus |
| 2L | 23513712 | 2L | 2961737..2961914 | 252..429 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:43:30 has no hits.
FMO13741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:36 Download gff for
FMO13741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fne-RG | 1107..2134 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:30 Download gff for
FMO13741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fne-RG | 1107..2134 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:30 Download gff for
FMO13741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12942649..12942856 | 1..208 | 98 | -> | Plus |
| X | 12943086..12943130 | 209..253 | 100 | -> | Plus |
| X | 12943193..12943450 | 254..511 | 99 | -> | Plus |
| X | 12943513..12943756 | 512..755 | 100 | -> | Plus |
| X | 12945166..12945438 | 756..1025 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:36 Download gff for
FMO13741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12836682..12836889 | 1..208 | 98 | -> | Plus |
| arm_X | 12837119..12837163 | 209..253 | 100 | -> | Plus |
| arm_X | 12837226..12837483 | 254..511 | 99 | -> | Plus |
| arm_X | 12837546..12837789 | 512..755 | 100 | -> | Plus |
| arm_X | 12839199..12839471 | 756..1025 | 96 | | Plus |
