FMO13748.5prime Sequence
960 bp (876 high quality bases) assembled on 2013-08-24
> FMO13748.5prime
TCAGTCGACATGCGACGTCCGCTCTCGCCGACATTGGCCAAGTTGGCCGA
GCAGGAGGTGAACGAGACGCCCGACAGGATTCAGCAGGATATTATCATCC
TGCGCGTGTGGATTCGCCAGCAGCCGCATCTGCGCGCCCGCACAGATGTG
GACTTCCTGATCGCCTTCCTCAGACGCTGCCGTTACAGCCTGGAGGAGAC
CAAGCGCCGGATCGATCGCTACTTCACCCACTACAATCTATTTCCGGAGA
TCATGAATAACCGCTGTGTGACTCAAAGACTTCTGGACATCAATCGGATG
GGAGTTTGTCTCTATCCGGATATGCCAAAGGGTGATAGCCGTAGTGCCAT
GTTTATAGCCCGTTTCGGTCATTTCGATCCCAATTTGTACATGCTGCGGG
AGATCTATCATTTTTCGTCGATGGCCATGGAGGTGATTGCGCTGGAGAAT
GACTATGCCAGCTTGGCGGGAATCTGCGAAATAATTGACCTCGAGGGCGT
CAACTCGGATAAGATGCGACGCTTTGATAGGGTTCTATTTCGCAAATGGT
GGAACTGGCTCTACAATTGCAGCCCCCTTAAAGTGAAGGAGATGTATATC
ATAAATATGCCCAAGGATATTCAGGGTACCGTCATGTTTCTGTACAACGT
GCTTAGCATGCAAGTCAACTATCCGATACGCGTGCTGAAGAACAGCGAAG
AGCTAATCGAGCACATTGGCCAGGAATCGCTGCCGGAGGAGTATGGCGGT
ACCAATGGACATTTGGGTGAATGTGTGGCTACATGGAGGACCTGTTGAAT
AGCTATCGTGATTATTTCGAGCAGGACTGCAACTACGGGACCATTGAGAA
GCTGCGGCACGGCGAATATCCCATTATGAAAGCGAATTTTGGAGCCGATG
GCTCCTTCCGCTCGTCCAAATTGGCAAGCTAAGCTATCCTAAACCTCTCG
TTTGACGCCT
FMO13748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10301-RB | 1000 | CG10301-RB | 1..915 | 10..924 | 4290 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23710516..23710889 | 302..675 | 1870 | 100 | Plus |
| 3R | 32079331 | 3R | 23710158..23710450 | 10..302 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 23711004..23711240 | 675..910 | 880 | 92.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:43:13 has no hits.
FMO13748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:25 Download gff for
FMO13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10301-RB | 1..915 | 10..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:20 Download gff for
FMO13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10301-RB | 1..915 | 10..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:20 Download gff for
FMO13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23710158..23710450 | 10..302 | 100 | -> | Plus |
| 3R | 23710517..23710889 | 303..675 | 100 | -> | Plus |
| 3R | 23711005..23711249 | 676..919 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:25 Download gff for
FMO13748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19535880..19536172 | 10..302 | 100 | -> | Plus |
| arm_3R | 19536239..19536611 | 303..675 | 100 | -> | Plus |
| arm_3R | 19536727..19536971 | 676..919 | 93 | -> | Plus |
