FMO13751.5prime Sequence
1075 bp (996 high quality bases) assembled on 2013-08-24
> FMO13751.5prime
TCAGTCGACATGGACATCAAGATTGAGCAGCAGCAGCAGCAACAGCAAGT
GGAGCTGGGACCCTGTTCCCCCTCGGAGGTGCCCAATGATCCCGGAAAAA
TGTTCATTGGCGGCCTCAGTTGGCAGACAAGTCCAGAGAGCTTACGCGAT
TACTTCGGACGTTACGGTGATATCTCAGAGGCTATGGTCATGAAGGATCC
CACGACGCGCAGATCCAGAGGCTTCGGCTTTGTCACATTCAGCGATCCAA
ATAGCGTAGATAAGGTACTCACCCAAGGCACACACGAGCTGGATGGCAAA
AAGGTCGATCCGAAAGTAGCTTTTCCGCGCCGTGCACATCCCAAGATGGT
GACGAGAACGAAGAAAATCTTTGTGGGCGGCCTCTCGGCGCCCACCACAC
TGGAGGATGTCAAAAGTTACTTCGAACAGTTTGGTCCGATCGAGGATGCA
ATGTTGATGTTCGATAAGCAGACCAATCGGCACAGAGGTTTTGGCTTCGT
TACATTTCAAAGCGAAGATGTGGTAGACAAAGTTTGCGAAATTCATTTCC
ACGAGATAAACAACAAAATGGTCGAGTGCAAGAAGGCGCAGCCGAAGGAA
GTGATGCTGCCGGCCAATCTGGCCAAGACGCGGGCTGCCGGGCGTTCTGC
ATACGATAACATCATGTGGGGACTGGGGACATTGCCCGAAGGTTTTCCGG
CAGCTGCCTATGCTGCTTATGCCGCTGGTCGCGGATACTCGGGCTATCCC
AGTTTTGGACTGCCCTATCCAACTGTTGATCTAACCAATGGGCAGCTGAC
ACCCAACAACAATACACCGCTGCTGACCCAGGCGCTGTCAGTGATGAACA
AACTATCAGCGGCTGCTGCCGCCTGCCCAACAGCTATGGGCCGTCGGATC
GCCGCATTGCCGCCGCCGCAACACGGCCACCCGGTAGGGATTCCCCTTCC
ACCAACTTACCTGGCCCCACATTCGACATTGTACAGATCGGCGGCCGTCG
ACAATGTGGGCCTATGAGTGCAGGCCCCCAAGTTCAGCAGCGCTGTCCGG
GCTTTCCCCATCGCGCGAATAGCCG
FMO13751.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp6-RG | 9015 | CG32169-RG | 1005..2049 | 8..1064 | 4740 | 97.5 | Plus |
| Rbp6-RA | 2173 | CG32169-RA | 1005..2049 | 8..1064 | 4740 | 97.5 | Plus |
| Rbp6-RB | 4368 | CG32169-RB | 1005..1652 | 8..655 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17128879..17128973 | 438..344 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 17167013..17167102 | 305..216 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 17235352..17235439 | 95..8 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 17078114..17078200 | 572..486 | 435 | 100 | Minus |
| 3L | 28110227 | 3L | 17074193..17074278 | 775..690 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 17077622..17077707 | 655..570 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 17179294..17179378 | 218..134 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 17067212..17067381 | 1011..839 | 340 | 91.5 | Minus |
| 3L | 28110227 | 3L | 17067993..17068059 | 841..775 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 17084106..17084157 | 489..438 | 260 | 100 | Minus |
| 3L | 28110227 | 3L | 17164913..17164956 | 345..302 | 220 | 100 | Minus |
| 3L | 28110227 | 3L | 17221802..17221843 | 136..95 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 17074351..17074389 | 693..655 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:43:55 has no hits.
FMO13751.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:51 Download gff for
FMO13751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp6-RA | 1005..2023 | 8..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:44 Download gff for
FMO13751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp6-RA | 1005..2023 | 8..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:44 Download gff for
FMO13751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17074193..17074276 | 692..775 | 100 | <- | Minus |
| 3L | 17074353..17074388 | 656..691 | 100 | <- | Minus |
| 3L | 17077622..17077706 | 571..655 | 100 | <- | Minus |
| 3L | 17078116..17078198 | 488..570 | 100 | <- | Minus |
| 3L | 17084108..17084156 | 439..487 | 100 | <- | Minus |
| 3L | 17128879..17128971 | 346..438 | 100 | <- | Minus |
| 3L | 17164913..17164954 | 304..345 | 100 | <- | Minus |
| 3L | 17167015..17167099 | 219..303 | 100 | <- | Minus |
| 3L | 17179294..17179375 | 137..218 | 100 | <- | Minus |
| 3L | 17221802..17221842 | 96..136 | 100 | <- | Minus |
| 3L | 17235352..17235439 | 8..95 | 100 | | Minus |
| 3L | 17067993..17068058 | 776..841 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:51 Download gff for
FMO13751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17061093..17061158 | 776..841 | 100 | <- | Minus |
| arm_3L | 17067293..17067376 | 692..775 | 100 | <- | Minus |
| arm_3L | 17067453..17067488 | 656..691 | 100 | <- | Minus |
| arm_3L | 17070722..17070806 | 571..655 | 100 | <- | Minus |
| arm_3L | 17071216..17071298 | 488..570 | 100 | <- | Minus |
| arm_3L | 17077208..17077256 | 439..487 | 100 | <- | Minus |
| arm_3L | 17121979..17122071 | 346..438 | 100 | <- | Minus |
| arm_3L | 17158013..17158054 | 304..345 | 100 | <- | Minus |
| arm_3L | 17160115..17160199 | 219..303 | 100 | <- | Minus |
| arm_3L | 17172394..17172475 | 137..218 | 100 | <- | Minus |
| arm_3L | 17214902..17214942 | 96..136 | 100 | <- | Minus |
| arm_3L | 17228452..17228539 | 8..95 | 100 | | Minus |
