FMO13752.5prime Sequence
573 bp (573 high quality bases) assembled on 2013-08-24
> FMO13752.5prime
TCAGTCGACATGGACGTGCAACCGCCACGCGATGCCAGTTTACGAAATAT
TATCGACAAACTGGCGGAGTTTGTGGCCAGAAATGGGCCGGAATTCGAGG
CGATAACCAAGCAGAAGCAGCAGAACAATCCAAAGTTCGAGTTCCTCTAC
GGCGGGGAGTTCGCCAACTATTATCAATTCAGGGTGGCAGCGGAACAAGC
TCTGCTAAAGCAACAGGCCATTAACCAACAACTGCCACCAGGTGCTCCAT
CCGGCCACTACATGCAACATCCGCCGCCAATGCAGCAATCCCAACCACCG
GGCCTCTATCCGCCACCCAATCAGCAGCCACCGCACCCGCCCGAAACCGC
ACAAGACAATATGCAACAGCAAACACAGCACTCCTGGCCGCCGAACTCCG
GCAACGGTGGGCCGCCAAACAATCAGCAGGCCAATGGCAATCCCATGGCC
ATGAATCTAACGTCACAACTGGAAGCCATCAAGATGCAGCAGAAGTCGCT
GCGGGAACAGATCCAGCAATCCGAAGCGAATCTCTCCGCACAGCACACGG
TAATTGCAAGCTTTCTAGACCAT
FMO13752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-RC | 1415 | CG33522-RC | 116..661 | 10..555 | 2730 | 100 | Plus |
| scaf6-RE | 2998 | CG33522-RE | 116..656 | 10..550 | 2705 | 100 | Plus |
| scaf6-RA | 3071 | CG33522-RA | 116..656 | 10..550 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17041688..17042040 | 555..203 | 1765 | 100 | Minus |
| 3L | 28110227 | 3L | 17042103..17042274 | 202..31 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:43:58 has no hits.
FMO13752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:53 Download gff for
FMO13752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RC | 105..668 | 1..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:46 Download gff for
FMO13752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RC | 105..668 | 1..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:46 Download gff for
FMO13752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17041681..17042040 | 203..563 | 99 | <- | Minus |
| 3L | 17042103..17042273 | 32..202 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:53 Download gff for
FMO13752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17034781..17035140 | 203..563 | 99 | <- | Minus |
| arm_3L | 17035203..17035373 | 32..202 | 100 | <- | Minus |
