FMO13760.5prime Sequence
873 bp (873 high quality bases) assembled on 2013-08-24
> FMO13760.5prime
TCAGTCGACATGCGTCTACCTATACGGCAGCTTGTGATAGTAGCCTGTCT
TTTTATTGGGATTATCCGGACGGAATCCGGACGCTTACTGGAAAACGACT
GTGGAACCACGAGCAGTAATGGTTATAGAGCGCGAATCGATGGAGGTAGA
GATGCTGGCATGGAATCGAACCCCTGGATGGTCAGAGTAATGATTTCGGG
AAAAGCAGTGTGTGGCGGTTCACTTATAACTGCTCGATTTGTTTTGACCG
CCGAGCATTGCATTTCCCCAATGTATATGAATGTGCGCCTGGGCGAATAC
GATACCCGACATCCCATATTCGACTGCGATGATTTTGTCTGCACACCAAG
GGCCTACAATGTGGACGTGGATAGGAAAATTGTTCATAGTAATCCAGGAT
ATGATATTGGTCTGTTGCGAATGCAAAGGAGTGTGATATTCTCAAACTAT
GTCAGACCAATCTGCTTGATTCTGGGCAAAACGTTGGGTGGGAACCCACT
CTCAATATTACGCTTCAATTTCACCGGATGGGGTACAAATAGTGATGGAG
AAGAGCAAGATAGGCTACAGACTGCCACCCTGCAACAATTACCTCAATGG
AGTTGTGAAAGACCTGGAAGACCTCTCGATATATCCTATATATGTGCCGG
CAGTTATATCAGTGATTCGTGCAAAGGCGATTCGGGAGGTCCTTTGAGCG
CAATTCGTACATTTGAGGGGCAGGGAAGGGTCTTCCAGTTCGGTGTCGCT
AGCCAAGGACTTCGGTTGTGCAGTGGCTTGGGAATTTACACCAATGTCAC
ACACTTTACGGACTGGATATTGGATGTTATTCAAAACCATTCAGACGACT
TTGAAGCAAGCTTTCTAGACCAT
FMO13760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30288-RC | 965 | CG30288-RC | 25..870 | 10..855 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21519338..21519747 | 855..446 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 21520143..21520369 | 236..10 | 1120 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21519815..21519981 | 445..279 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 21520038..21520081 | 279..236 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:43:52 has no hits.
FMO13760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:46:49 Download gff for
FMO13760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30288-RC | 25..870 | 10..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:22:42 Download gff for
FMO13760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30288-RC | 25..870 | 10..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:22:42 Download gff for
FMO13760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21519338..21519747 | 446..855 | 100 | <- | Minus |
| 2R | 21519815..21519981 | 279..445 | 100 | <- | Minus |
| 2R | 21520039..21520081 | 236..278 | 100 | <- | Minus |
| 2R | 21520144..21520369 | 10..235 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:46:49 Download gff for
FMO13760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17406843..17407252 | 446..855 | 100 | <- | Minus |
| arm_2R | 17407320..17407486 | 279..445 | 100 | <- | Minus |
| arm_2R | 17407544..17407586 | 236..278 | 100 | <- | Minus |
| arm_2R | 17407649..17407874 | 10..235 | 99 | | Minus |
