FMO13762.5prime Sequence
1084 bp (982 high quality bases) assembled on 2013-08-24
> FMO13762.5prime
TCAGTCGACATGTTGTTCGGACTTATAGGATCATTTTTGCTTATGCTGCA
AATAATTCTTGTGCCTTATTCAAATGGTGCAGGGTGTCAATTTGATACGG
AATGCGTGAATCTGGATAAGTGTCCCAGGACCAGAGCAGTTATGAACTCA
TCCAGGAAAAATATAATAGGTCTTAGAAGATGCGGCACTAATAAAGTGTG
CTGCCCCAAGTGGGAAACGTATCTGCCACACGATACTTGTGGACAATCAA
GAAGAAAACCTACGAAGGGCAAAATACCGGCGCTGAATGAGTTTCCCTGG
ATGGCCATGCTGTTATATGGAAATAAAAACAATTTGTCCCAGAAGCTGGT
ACCAAAATGTGGTGGATCCCTAATAAACAACTGGTACGTCCTGACCGCAG
CGCACTGCGTGGAGTATCCATTTATGGACTATCCGTATGCCCTCAAAACA
GTGAGACTGGGCGAACATAACACGTCCACAAATCCCGATCGGGCTATTGT
GAATGGAAGAAGACAGTACGCTCCTCTTTATATGGAAATTGAAGTGGACC
AAATTATTACGCATGAACAATTCAACCGGGGAAGGCGGCTGATAAACGAC
ATAGCACTCGTGCGTCTTAAGTTTCCTGTGCGCTATACGAGAGCCATCCA
ACCTATTTGCCTTCCAAGAGCCCAAAAATTGGCCGCGCATAAGCGAAAGT
TTCAAGCATCCGGCTGGCCAGACATGGGACAAGGAATTGCAAGTGAGGTA
CTCTTGCGCAGCTTCATCGCGGAACGGCATCCAGATGTGTGCAAATCAAA
TTATGACTTTAATTTGGGCAGTCAGATATGTGCTGGTGGTCTGGATGGGA
ATGACACCAGTCCCGGCGATTCCGGGGGACCTTTAATGGAGACCGTGATA
CGTGGAAAGGGTCACACTCACTATGCAGCCGGCATATCTCTACGGACAGA
GCCCTGCGTACTTAAAACTGCAGGCCAGCATTTTACCCAAACTTCATACT
TTTTGAATGCATAAATCGAATTGCAAAGTCCATTTATCGACAGCGAACGC
AAATCTCGTACTAGAAAGCAGCTTTTCTTAGACA
FMO13762.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8870-RA | 1535 | CG8870-RA | 297..1365 | 8..1067 | 4995 | 98.4 | Plus |
| mRpS21-RB | 475 | CG32854-RB | 412..467 | 1067..1013 | 225 | 94.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13380266..13380818 | 80..632 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 13380895..13381339 | 632..1067 | 1625 | 96.2 | Plus |
| 3R | 32079331 | 3R | 13380138..13380213 | 8..83 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:39:19 has no hits.
FMO13762.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:25 Download gff for
FMO13762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8870-RA | 1..1071 | 10..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:32 Download gff for
FMO13762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8870-RA | 290..1365 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:32 Download gff for
FMO13762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13380131..13380212 | 1..82 | 95 | -> | Plus |
| 3R | 13380269..13380818 | 83..632 | 100 | -> | Plus |
| 3R | 13380896..13381339 | 633..1067 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:25 Download gff for
FMO13762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9205853..9205934 | 1..82 | 95 | -> | Plus |
| arm_3R | 9205991..9206540 | 83..632 | 100 | -> | Plus |
| arm_3R | 9206618..9207061 | 633..1067 | 96 | | Plus |
