FMO13768.5prime Sequence
1130 bp (996 high quality bases) assembled on 2013-08-24
> FMO13768.5prime
TCAGTCGACATGATCCTGAGCGTCGTGATGCCATTCACCAAGGCGCGACA
CTTGCGCGACCAGGTGGCACTGGACTACGCCTACGACGAGGACAACTCCG
GCCGATCTTCCTCGTCGTCATCGTCATCCTCATCATCGGGTGGCGACATC
CTGCCCGCCTTCGATGTCAATCCGTATCGCGGTCTGGCCGATAGCTTCGG
CGAGGGCAGCTACGACAGTGATATGAGTCTCAGCGAGAGTAGCTACGAGG
AGATCGCCCAGGCGGCCATCCGGGCTGCCAGGCGGGAGATGCGCCGTCAG
AGGACGCGACACGCGCGCAGCCACAACCTGCGACTCTTCTCCGGCAAATC
AGAGATCCCGGAGTGGGAGAACCCGTGCGGAGGCACCTACACGCCCGACG
AGAGCCTCAGCGATAGCAGCGCCAGCCAAGGACGAGTTATCAAGCGCAAG
CACCTCGAAAACTTGCGGAACATCACGATGAGCGAATACCAAGATATAAC
CCACCGCGCCACCCTGGAGTACGGCAATCTGCAGCACTGGCAGCGCGAGT
ACAAGTTCCTGCCGAACATGACGAGGCCCACAAGTGCGGTGAAGCTAAAG
ACTTGGTACCGCCACATGCAGACCTTCGTGGGCAGCTTCTCATATCTGGG
ACGGGCGCAGTACAAGTTCCGCAAGGATCAGCAGAAGAGCCTCAACGAGG
CGGTCACCAAGGAGCTGCACGACCTGCTGGTCAGCGCGCGCTATATGCTC
TGCGAGATCGAGTTGACCATAAACGCCTCCTATCCGAACAGCAATGGTGC
GAAGCTGAGCCGCGTTAGCCGGCAGGCGATGGAGGAGCGTCTCAACTTTC
ACACGCCCGCCAACGGATCCATGGAGGCGGACCAGCGCGACCTGAAGGTC
AGCAAGGAGCTGTACTTTCCAGTATCTGAACAACGTGGTGGAAGAACCCT
GCACCGTGTCTGCGCGACCGCGACGCAATAGTGCGAGCGGCGACCCCTGC
GCGATTCACGGAACTGGTGCGAGCGGCCTGGCGGGGCGGCACTCGAAATG
CTCGACATGGCTCCCTCGAACCGGAATCGGGTGGCAGTTCGGCCTTCGAA
TGGCGGATTCATTGACTTGCAGCTTTCTAG
FMO13768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-RB | 1980 | CG5988-RB | 173..1279 | 9..1115 | 4995 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18242565..18243006 | 450..9 | 2210 | 100 | Minus |
| X | 23542271 | X | 18241438..18241882 | 1030..588 | 1815 | 97.3 | Minus |
| X | 23542271 | X | 18242078..18242219 | 590..449 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:39:33 has no hits.
FMO13768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:36 Download gff for
FMO13768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 166..1243 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:42 Download gff for
FMO13768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 166..1243 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:42 Download gff for
FMO13768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18242080..18242217 | 451..588 | 100 | <- | Minus |
| X | 18241391..18241881 | 589..1078 | 95 | <- | Minus |
| X | 18242565..18243013 | 1..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:36 Download gff for
FMO13768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18135424..18135914 | 589..1078 | 95 | <- | Minus |
| arm_X | 18136113..18136250 | 451..588 | 100 | <- | Minus |
| arm_X | 18136598..18137046 | 1..450 | 99 | | Minus |
