FMO13771.5prime Sequence
1024 bp (939 high quality bases) assembled on 2013-08-24
> FMO13771.5prime
TCAGTCGACATGTTGGCGAAAATTACAAGGAGTTCATTTTACGCTTCACG
TGCGGTTGGTCGCTTGTCCGGCTCGATTCCAACGTCACCAGCGGCCCTTG
CCAGCAATTGCAGATATATTCAGATAGAACGGAAGCGCACGAAATCACAC
GAGATGGCTCTGTACGAAACCGTTGAGAAGGGCGCTAAGAATTCGCCGAG
CTACAGCCTGTATTTCAAAAACAAGTGCGGCAATGTCATCTCGCCGATGC
ACGACATTCCACTGTACGCCAACGAGGAGAAAACTATCTACAACATGGTG
GTGGAGGTGCCACGTTGGACCAACGCGAAAATGGAGATTAGCTTGAAGAC
CCCTATGAATCCCATCAAGCAGGACATCAAGAAGGGTAAGCTGCGGTTCG
TGGCCAACTGCTTCCCGCACAAGGGCTACATCTGGAACTACGGAGCCCTG
CCCCAGACCTGGGAAAACCCCGACCACATCGAGCCCTCCACCGGCTGCAA
GGGTGACAACGATCCCATCGATGTCATCGAGATTGGCTACCGAGTGGCTA
AGCGCGGCGACGTGCTGAAGGTCAAGGTGCTGGGCACCATTGCCTTGATT
GACGAGGGCGAAACCGACTGGAAGATAATCGCCATCGATGTGAACGATCC
GTTGGCCTCGAAAGTCAATGATATCGCCGATGTGGACCAGTACTTCCCGG
GTCTGCTTCGTGCCACCGTTGAGTGGTTTCAAGATCTACAAGATCCCCGA
TGGCAAGCCTGAGAATCAGTTTGCTTTCAACGGCGATGCCAAGAATGCGG
ACTTTGCCAACACCATCATTGCCGAGACCCACAAGTTCTGGCAGACTTGT
GCACCAGAGCCCCGCATCCGGGTCCATCTCACCACCAACATCACCAACCG
CAACTCGGAGCACGTCATCCCAAGAGAGCCGAGAGATACTGCCGAGCCCC
GATGCGCCAGGTCGAGGAGTTCTGATACAGTCGACACTTGCATTTCATTC
ATCTCAGCAGCCTTTCTGGACCAT
FMO13771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-RA | 1178 | CG4634-RA | 28..1039 | 10..1006 | 4650 | 98.3 | Plus |
| Nurf-38-RB | 1144 | CG4634-RB | 1..1005 | 17..1006 | 4615 | 98.3 | Plus |
| Nurf-38-RC | 1281 | CG4634-RC | 1..978 | 17..980 | 4505 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24559834..24560227 | 728..335 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 24560853..24561060 | 217..10 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 24559626..24559776 | 880..732 | 660 | 97.4 | Minus |
| 2R | 25286936 | 2R | 24560292..24560410 | 336..218 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:39:41 has no hits.
FMO13771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:42 Download gff for
FMO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RA | 23..1041 | 3..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:48 Download gff for
FMO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RA | 23..1041 | 3..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:48 Download gff for
FMO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24559623..24559774 | 734..882 | 98 | <- | Minus |
| 2R | 24559830..24560225 | 337..733 | 99 | <- | Minus |
| 2R | 24560292..24560410 | 218..336 | 100 | <- | Minus |
| 2R | 24560853..24561065 | 3..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:42 Download gff for
FMO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20447146..20447297 | 734..882 | 98 | <- | Minus |
| arm_2R | 20447353..20447748 | 337..733 | 99 | <- | Minus |
| arm_2R | 20447815..20447933 | 218..336 | 100 | <- | Minus |
| arm_2R | 20448376..20448588 | 3..217 | 98 | | Minus |
