FMO13774.5prime Sequence
1050 bp (934 high quality bases) assembled on 2013-08-24
> FMO13774.5prime
TCAGTCGACATGAAACTGACCGCTTTCCTCGAGGCTTCGTTTCTGCTAAT
CTGCTGGTCTCAAGCTGTCAGCAGCCATGTCTTTGGCTACTCCGAGCCCA
ACCAGCGACGCTGGGCCCGCCATCATGGTCACTGTGCGGGAAAGACCCAG
TCCCCGATTGCCATCACCACCAGCCGGACAACGGCCATTCATATGCCGGC
GGTGGACATGATTGGCTATCACAACCTGCTGCCCTACCCACTGAAAATGA
TCAACAATGGACACACGGTTTCCATCACCATACCTAAGGTCAATGTGACT
GAGGTGGGCGAGGATTTCCTACCCTACATCCGGGGCGCCAAGCTGCCCGG
TGAGTTCGAGGTGGAGGGCCTCCACTTCCACTGGGGCGACAAGAACAACC
GGGGATCCGAGCATGTCATTAACGACATCCGCTACACCATGGAGATGCAC
ATTGTGCACCGGAACAAGAAGTACGCAACCATTGGCGAGGCTCTTAATCA
TCCGGATGGTGCCGCCGTCCTGGGTTTCTTCTTCAATCTCGACGAGGATG
AGGGTGCTGGCCTGGTGACCATTAACCGACATTTGCATCTGATTGCCGAT
GCCAATCAGGAGGCCACGCTGAACGTCACTTTCTCGCTCTCCTCGCTGAT
TGCTGGCGTGGATGTGGACAAGTTCTACACGTACAACGGTTCCCTGACCA
CGCCGCCCTGTTCGGAGGCCGTCACCTGGATACTGTTTCCCGATCCCATA
CCCATTTCACCCAAGCAGATCTCCCGATTCCGTCAGCTGTCGGACACGCA
GGATGGTGCGTTGGTGGACATTTCAGGACCCTGCAGCCCGTGGGCCATCG
CAAGGATCTTCGCGCGCACTGGACACGTGCGTCACACCTCGATTGCCACA
TTGTAGCACGAGGCCGATAATCTCAGGTACGACTGGTTCTACGCAGCCTT
TCTAGACCATTCGTCTGCCGCGCGGACCCAGAAATGTCATATCTAATCGT
TATCATTATCTATCTCAAGCTGAGGCCTAGATGGAATCCTGGATCTGAAC
FMO13774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6074-RA | 1130 | CG6074-RA | 60..994 | 8..942 | 4465 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27103793..27104062 | 537..268 | 1320 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27103124..27103378 | 942..688 | 1075 | 96.5 | Minus |
| 3R | 32079331 | 3R | 27103575..27103727 | 690..538 | 750 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27104314..27104428 | 177..63 | 560 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27104156..27104247 | 268..177 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 27106069..27106125 | 64..8 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:39:50 has no hits.
FMO13774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:48 Download gff for
FMO13774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6074-RA | 60..994 | 8..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:20:54 Download gff for
FMO13774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6074-RA | 60..994 | 8..942 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:20:54 Download gff for
FMO13774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27104156..27104246 | 178..268 | 100 | <- | Minus |
| 3R | 27104314..27104426 | 65..177 | 99 | <- | Minus |
| 3R | 27106069..27106125 | 8..64 | 100 | | Minus |
| 3R | 27103124..27103377 | 689..942 | 96 | <- | Minus |
| 3R | 27103577..27103727 | 538..688 | 99 | <- | Minus |
| 3R | 27103793..27104061 | 269..537 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:48 Download gff for
FMO13774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22928846..22929099 | 689..942 | 96 | <- | Minus |
| arm_3R | 22929299..22929449 | 538..688 | 99 | <- | Minus |
| arm_3R | 22929515..22929783 | 269..537 | 99 | <- | Minus |
| arm_3R | 22929878..22929968 | 178..268 | 100 | <- | Minus |
| arm_3R | 22930036..22930148 | 65..177 | 99 | <- | Minus |
| arm_3R | 22931791..22931847 | 8..64 | 100 | | Minus |
