FMO13777.5prime Sequence
1014 bp (893 high quality bases) assembled on 2013-08-24
> FMO13777.5prime
TCAGTCGACATGGTGCTGCGATCGGGAATCATAATTCCGTTTCAGTTTCG
CGACACGAAGAAGCTGCTGATGATCGGGGTGCCGCAGGAGAACCGCGACC
TAAACATATGGGACCTAAAGAACGTGGTGCGCGCCGCTTTCGGGATCTAC
AACTTCGAGTTCCGGAACAAGAAGATCGGCTTCAACATCCCGGACGAACT
GCTGCTGCACTATCTGGCCCAGAGGCACGACCTCACCAACTTCGTTATAG
AGATCAGTCAAGTCTACGATGTCGGCCTGGACAACTATGTGCTGAATCGC
CAGTGCCGCTGTACAGACCAGAAAATGCTCAACGATTCGCCAACGCCCGA
GGAACCAACCAATTTGTGCCAGCCCAGCAATGTGCTAGAGGCCGCGCCGA
CTCCGCTCATGTCGCTGCCACCCTGCGAGGACGAGGATCACGAGCCTGAG
CATGAGCACGAGCACGAGGAGAGCATGAAGTATCGGATCGATAAGGAGAG
CAGTGGAGCTGCCTCCGCAGAGCTGGGCTTGCCCGCCTACGAGGCCTGCT
CGCCCAAGATGGACTACGACACGCAGGACGAGCTGCCGGACTCGCCGCAC
TCGCAGCCGCTGCCACCACCGCCTTTCCCATTGTCCACGGGCCTTGCCGC
TGCCGCCTCCGCCCACCTCGCATCACCAACATCTGCAACAGCAGCAGCAG
CAGCAGCATGAGGAGCGCATCCAGCAAGAGTACATCATCCAGCAGCAGCA
GCAACATCAGCAGATTCAGCAGCAACAACACCACCTGGCTCTCCTGCAGC
AGCAGCAGCAGCATGAGCAACAGCCAGCAGATTCAGCAGCACCAGGAGTC
AACATAGCCATAGCACACTGCGAACAACAACATTCGACAGCGCAAGAGCG
CATGTCCCAGCGGCAGACGAACTGTACGTACCTTCCTGCAGCAGCACAAG
TTCATCACGATCACGTCGCATGATCCTGTCCTGACATCCTGACTGAGCTA
ACAACTTGCTGAAA
FMO13777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42676-RF | 1668 | CG42676-RF | 104..1079 | 10..978 | 4510 | 98.2 | Plus |
| CG42676-RD | 1567 | CG13923-RB | 104..1079 | 10..978 | 4510 | 98.2 | Plus |
| CG42676-RE | 1577 | CG42676-RE | 104..356 | 10..262 | 1250 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1805008..1805459 | 261..713 | 2215 | 99.8 | Plus |
| 3L | 28110227 | 3L | 1803432..1803567 | 127..262 | 665 | 99.3 | Plus |
| 3L | 28110227 | 3L | 1803210..1803327 | 10..127 | 590 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2511 | 691..899 | 306 | 66.4 | Plus |
FMO13777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:54 Download gff for
FMO13777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RD | 104..1084 | 10..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:00 Download gff for
FMO13777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RD | 104..1084 | 10..983 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:00 Download gff for
FMO13777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1803210..1803327 | 10..127 | 100 | -> | Plus |
| 3L | 1803433..1803567 | 128..262 | 99 | -> | Plus |
| 3L | 1805010..1805458 | 263..712 | 99 | -> | Plus |
| 3L | 1805531..1805708 | 713..888 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:54 Download gff for
FMO13777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1803210..1803327 | 10..127 | 100 | -> | Plus |
| arm_3L | 1803433..1803567 | 128..262 | 99 | -> | Plus |
| arm_3L | 1805010..1805458 | 263..712 | 99 | -> | Plus |
| arm_3L | 1805531..1805708 | 713..888 | 96 | -> | Plus |
