FMO13779.5prime Sequence
1066 bp (978 high quality bases) assembled on 2013-08-24
> FMO13779.5prime
TCAGTCGACATGAATAGTAATCGAACGTCGTCTTCGCACAATTCGAGAAA
TCTAAAGATTCTTAATGCCAGTTTTGACGTTCCACGACCTCCAGGCGGCG
GCAACTCGCCCTTGCCGTCACAGGGTCGCTCTGTACGCGAATTGGAGGAG
CAGATGTCCGCGCTGCGCAAGGAGAACTTCAATCTAAAGCTGCGCATCTA
CTTCCTCGAGGAGGGTCAGCCGGGTGCCCGGGCAGACAGCTCCACAGAAT
CCTTAAGCAAACAGCTCATCGATGCCAAGATCGAAATCGCGACATTGAGA
AAAACTGTCGATGTAAAGATGGAGCTGCTCAAGGATGCCGCTCGAGCCAT
TTCTCATCACGAGGAATTGCAGCGCAAAGCAGACATTGACAGCCAGGCAA
TAATCGACGAGTTGCAAGAGCAAATACACGCCTATCAGATGGCGGAGTCT
GGTGGTCAACCTGTCGAAAATATTGCCAAAACCAGGAAAATGTTGCGCCT
TGAATCGGAGGTGCAGAGATTGGAGGAGGAACTGGTGAATATCGAAGCTC
GTAACGTTGCAGCCCGGAACGAGCTGGAATTCATGTTGGCCGAGCGCCTA
GAATCCCTAACAGCCTGTGAGGGCAAGATTCAAGAGCTGGCCATCAAGAA
TTCCGAACTGGTAGAGCGTCTTGAAAAGGAAACAGCATCCGCCGAGTCAT
CCAACGAGGCCATAGACTCTCTTAAGGTTGAATTAGAAGCCTGTAGGAAG
AGAATCACGATCTGGTGACCTCCATTCGAACCTTAAAACATGATATGAAG
CGACAAGTCCGCTCGATGAAGAGGCCGCCAATACGATGGACGTGCAGCGT
CAGTCCATCCTGCTCTTGAAGCCACATCAAGCGCAAGGAAAAGTCGTGCG
AAGTTATGCAGAGACGTGCTAACTATGAGCACTGATAGCCAGTTAAACGC
CGACTGAGACTATGAGCAACAGAATGTTTACTTCCGTGAGCTCTCGAAAA
CCTACCACAGAAGGAGGTGCGGCACCTGATCGCGCGGCGTGCCATCATGC
AACGATGTGGCCATAG
FMO13779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RH | 1824 | CG4832-RH | 109..1164 | 9..1051 | 4770 | 97.8 | Plus |
| cnn-RG | 1709 | CG4832-RG | 109..1164 | 9..1051 | 4770 | 97.8 | Plus |
| cnn-RJ | 4830 | CG4832-RJ | 109..1164 | 9..1051 | 4770 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13444765..13445138 | 438..65 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 13444427..13444696 | 706..437 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 13444178..13444342 | 868..706 | 710 | 98.2 | Minus |
| 2R | 25286936 | 2R | 13443939..13444100 | 1028..876 | 310 | 89.5 | Minus |
| 2R | 25286936 | 2R | 13445211..13445266 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:40:03 has no hits.
FMO13779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:56 Download gff for
FMO13779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RJ | 109..1159 | 9..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:02 Download gff for
FMO13779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RJ | 109..1159 | 9..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:02 Download gff for
FMO13779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13444175..13444342 | 706..870 | 97 | <- | Minus |
| 2R | 13444428..13444694 | 439..705 | 100 | <- | Minus |
| 2R | 13444765..13445138 | 65..438 | 100 | <- | Minus |
| 2R | 13445211..13445266 | 9..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:56 Download gff for
FMO13779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9331680..9331847 | 706..870 | 97 | <- | Minus |
| arm_2R | 9331933..9332199 | 439..705 | 100 | <- | Minus |
| arm_2R | 9332270..9332643 | 65..438 | 100 | <- | Minus |
| arm_2R | 9332716..9332771 | 9..64 | 100 | | Minus |
