FMO13780.5prime Sequence
1021 bp (918 high quality bases) assembled on 2013-08-24
> FMO13780.5prime
TCAGTCGACATGCTCTGCCCTCCAACCATGCGTCCGGCCAGTCCCGCCGA
ATCCGAAATCTCCGTGGGCGGAGCCCCCAGCCCGCTGCCCACGCAGCATC
ATACGCATCCGCACTCGCATCCTCATCCGCTGCAGCATCCGCGGGCCAGC
ACCATTGATCTGCTGCAGCAGCAGCAGCTGCTGATGCAGCACCATGCCGC
AGCAGCCGCCGCAGCAGCTGCAGCCGCCTCCGGACTCACCCGGAGTGCCG
TCGGCAATTTGCCGGAGGACTACTTCCATCCGCTGAAGCGCCTGCGCATG
TCCTCGTCCTCCTCGGAGCCACGAGACCACACGCCCAGTCCGCCGTCAGC
AGTTCCGGAGCCCCAGACCAACCAGACTACCAAGTCGGCCATCGAGGGGG
TTAAGAGCTTCTCCATCGCGGACATACTGGGTCACTCGGAGAAGCAGCGC
GAGGAGTCCGTTTCCCCGCCCCCAAATGCAAACCTCCTGGCTCCACCTGC
CTCCCGGCCCATTGCCCCCTCGGGCGGATTACTGCAGCCACGCACGGAAC
CGTTGGATGTCCACCCGGCCGCTGCTGCTGCCATGCTCCTGCCAAGCGGA
CAGATTGTTCGGCCGTGGGATCACCTCCTGGGGCCGACCATGCCCGTCCG
CCCCTTCATCCCCTCCGCCCTGCTGCACTACGAGCAGCGCCTGGCCCTGG
ACTACCATCGCCAGTTGCAGGAACACTTTAACGCCCAGGCCCAGCTCCTT
CGCCACATGGGCATGAATCCCGCGATCATCGCTTCCGAGGACGGCAGCTC
GGAGCGTTCCCAGCGATCGAGCAGCAGCTATGGCAGCACCGAATGCTGCA
GCCCACGGCACGCGGAAAACTTGAAAACTAACCTACCCAGAGGAGTGAGG
CATGCTCAGAGATGAAATCAGAGAGCAGTCTACGAATTCAGAAGTCAACG
AAACCTCTCTGATGCTCTCTCCAGATGACAAATGACTTGACAGTCGCAGA
TAATTCCACTTGTCTCTTTCG
FMO13780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lbe-RA | 2277 | CG6545-RA | 445..1467 | 10..1012 | 4325 | 96.1 | Plus |
| lbl-RC | 1803 | CG6570-RC | 532..723 | 678..869 | 495 | 84.5 | Plus |
| lbl-RB | 1758 | CG6570-RB | 532..723 | 678..869 | 495 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21445234..21446093 | 869..10 | 4195 | 99.2 | Minus |
| 3R | 32079331 | 3R | 21433429..21433602 | 851..678 | 480 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:40:06 has no hits.
FMO13780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:44:58 Download gff for
FMO13780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbe-RA | 445..1339 | 10..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:04 Download gff for
FMO13780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbe-RA | 445..1339 | 10..900 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:04 Download gff for
FMO13780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21445199..21446093 | 10..900 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:44:58 Download gff for
FMO13780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17270921..17271815 | 10..900 | 98 | | Minus |
