FMO13781.5prime Sequence
618 bp (618 high quality bases) assembled on 2013-08-24
> FMO13781.5prime
TCAGTCGACATGTCCCTCCGTTTATTTATCCATAGTCGCGCATTCGGTGC
GCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCCGGAGCAGCGGCG
GGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCGCACAAAGATCAA
CTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAGCCTCGCTGCGCT
ACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCCCTGTGGCGGGGG
AACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGCCATACAGTTCAC
GGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACAAGGACGGCACCA
ACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCGGGAATCACCTCA
CAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCGCATGGCCGTCAC
GGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCTTCACCAAGATCT
GGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTACTGGGCGACCGTT
CTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCACCTACGAGACTCT
GCAAGCTTTCTAGACCAT
FMO13781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-RB | 1336 | CG4241-RB | 120..710 | 10..600 | 2955 | 100 | Plus |
| att-ORFB-RA | 1336 | CG33488-RA | 120..710 | 10..600 | 2955 | 100 | Plus |
| att-ORFA-RE | 1440 | CG4241-RE | 261..814 | 47..600 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20553896..20554204 | 351..43 | 1530 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20553587..20553835 | 600..352 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 20554253..20554290 | 47..10 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:40:08 has no hits.
FMO13781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:00 Download gff for
FMO13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RB | 116..715 | 5..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:06 Download gff for
FMO13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFB-RA | 116..715 | 5..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:06 Download gff for
FMO13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20554253..20554294 | 5..47 | 93 | | Minus |
| 3R | 20553582..20553835 | 352..606 | 99 | <- | Minus |
| 3R | 20553896..20554199 | 48..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:00 Download gff for
FMO13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16379304..16379557 | 352..606 | 99 | <- | Minus |
| arm_3R | 16379618..16379921 | 48..351 | 100 | <- | Minus |
| arm_3R | 16379975..16380016 | 5..47 | 93 | | Minus |
