FMO13783.5prime Sequence
1008 bp (979 high quality bases) assembled on 2013-08-24
> FMO13783.5prime
TCAGTCGACATGGATAGACAAGGTGTTCATAATAGCTATGGGTCAATAGC
GAAAGACGCAATAGATGAGCAACGGATGGTGCTATCGATGCCACAACTGT
CCATCCAGAGGAAATCCGTTACAAGCATGAAGTTATTCACCATGGTGGTG
TTGCACTCGTGGCGCCAACGCCGAAAGGAGGTTCGTGAACTCAAAGAGAT
GGTGCAACACCTCCAGGATAGCTCCATGAAGACCAAAAACGAACTGCACG
TATGTGGCACATTGATGCGTGTGGAGGAAAAACGAAACAGGGAACTTCAA
ATAAAGCTTAAGCTATCGACGATGAGCATTGACCAAGTAAGGTCCTCCTG
TGAATCTCTTGTCAACTCGGTCCGTGACCTCACAACAGAGAAAAGGCGAT
TGGAAACCGATTTGGAACAGCGCTTGCAGGAGTACAATGAGCTGGAGGAA
GTATCTGACAAAACCAAACGGCTGCTCTTCAGCGCCTACGTGGAACAATC
TAGCCTGCAAAAGCAACTAGCTGAGGAGCAGCGTACGACGCAGAGATTGC
AGGCGGAAAAGGACCAGCTAATCCAGGAAGTGATACTGGCGGAGGGCAGA
GATAACAAGTACCGCCAGGTGCGGGAATGGTACCAGCGTGTACTGCACAA
AAAGGAGGTGTGCATTTACAACCTGGGAAGGAGATTGCATATGCTGGAGG
AGCAACTGTTTGACATTAATGAGCACACTGGAGAATTGGAACAATTGCGT
GAGAGTGCTCAACAAATGTCGAACGAAAATCACAGAGTTGCGCCAGGAGA
TCAACCGAAATCGCAACGGTGTCTTCGGTGATTCCTGCTGTCGCCTCGGA
CTCGGACGCCTCCACGACCAATGTGATTGCGCCCTTTCAGGGCACCATAT
CTGGATAAAACTTCCGACGCTATTCCTTTAACGTGATATATTTAGTTTGC
TTTGTATCTGCTGCCCTGGAATGTCCCTCAATATCGTCAAACGCAAGCTT
TCAGACAT
FMO13783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5050-RB | 1139 | CG5050-RB | 127..1105 | 10..991 | 4715 | 99.1 | Plus |
| CG5050-RA | 1314 | CG5050-RA | 302..1280 | 10..991 | 4715 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17453882..17454174 | 431..723 | 1465 | 100 | Plus |
| 2L | 23513712 | 2L | 17453225..17453437 | 10..222 | 1065 | 100 | Plus |
| 2L | 23513712 | 2L | 17453515..17453724 | 223..432 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 17458476..17458741 | 723..991 | 975 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:40:14 has no hits.
FMO13783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:04 Download gff for
FMO13783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5050-RA | 302..1289 | 10..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:10 Download gff for
FMO13783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5050-RA | 302..1289 | 10..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:10 Download gff for
FMO13783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17453225..17453437 | 10..222 | 100 | -> | Plus |
| 2L | 17453515..17453724 | 223..432 | 100 | -> | Plus |
| 2L | 17453884..17454173 | 433..722 | 100 | -> | Plus |
| 2L | 17458476..17458750 | 723..999 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:04 Download gff for
FMO13783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17453225..17453437 | 10..222 | 100 | -> | Plus |
| arm_2L | 17453515..17453724 | 223..432 | 100 | -> | Plus |
| arm_2L | 17453884..17454173 | 433..722 | 100 | -> | Plus |
| arm_2L | 17458476..17458750 | 723..999 | 95 | | Plus |
