FMO13784.5prime Sequence
991 bp (935 high quality bases) assembled on 2013-08-24
> FMO13784.5prime
TCAGTCGACATGGGCAACGTAATGGCGTCCACCGCAGACGCTGAGTCCTC
TCGTGGGCGTGGACATCTGTCCGCCGGACTACGCTTGCCGGAGGCACCGC
AGTATTCCGGCGGAGTGCCGCCACAGATGGTGGAGGCCTTAAAGGCGGAA
GCTAAAAAGCCCGAATTGACAAATCCCGGAACTCTTGAGGAACTGCACAG
TCGCTGTCGCGACATCCAGGCCAACACCTTCGAAGGCGCCAAAATTATGG
TGAACAAGGGTCTGAGCAACCACTTCCAAGTGACCCACACCATTAACATG
AATTCGGCTGGTCCAAGTGGCTATCGTTTTGGAGCTACCTACGTGGGTAC
CAAACAATACGGGCCGACTGAAGCCTTTCCGGTTCTTCTTGGCGAGATCG
ATCCGATGGGCAATCTTAATGCAAACGTTATCCATCAACTGACCTCTCGT
TTGAGGTGCAAGTTTGCCTCGCAGTTCCAGGACTCAAAGCTGGTGGGCAC
CCAGCTGACGGGGGACTATCGCGGCAGAGACTACACGCTGACCCTGACAA
TGGGCAATCCGGGGTTTTTTACGAGTTCCGGAGTATTTGTGTGCCAGTAC
TTGCAGTCCGTCACCAAACGTCTGGCGCTAGGATCGGAGTTCGCCTATCA
CTACGGGCCGAATGTGCCCGGACGCCAAGTGGCTGTATTATCAGCGGTGG
GACGTTACGCCTTCGGTGATACCGTGTGGTCTTGCACTTTGGGACCCGCC
GGATTCCACCTTAGTTACTACCAGACGGCCAGTGATCAGCTACAGATCGG
AGTCGAGGTGAAAACGAATATCCGCCAGCAGGAGTCGACGGCCACGGTGG
CATACCAGATTGATCTGCCCAAGGCAGACCTAGTCTTCCGCGCAGTCCTC
CATTCCCATTGGCTTATTTCAGAAGTCCTTGAGAAAAGACTGCCGCCGCT
ACCGTTCCTCGTTAGCCATTAACGGCCGTATGAATCCACCC
FMO13784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tomboy40-RA | 1251 | CG8330-RA | 92..1067 | 10..986 | 4650 | 98.6 | Plus |
| Tom40-RC | 2395 | CG12157-RC | 639..1313 | 214..888 | 555 | 72.9 | Plus |
| Tom40-RB | 1861 | CG12157-RB | 511..1185 | 214..888 | 555 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6225725..6226700 | 10..986 | 4595 | 98.3 | Plus |
| X | 23542271 | X | 7737875..7738098 | 214..437 | 400 | 78.6 | Plus |
| X | 23542271 | X | 7738673..7738795 | 766..888 | 210 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:40:16 has no hits.
FMO13784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:05 Download gff for
FMO13784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tomboy40-RA | 88..1070 | 2..991 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:11 Download gff for
FMO13784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tomboy40-RA | 88..1070 | 2..991 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:11 Download gff for
FMO13784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6225721..6226703 | 2..991 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:05 Download gff for
FMO13784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2113226..2114208 | 2..991 | 97 | | Plus |
