FMO13788.5prime Sequence
895 bp (737 high quality bases) assembled on 2013-08-24
> FMO13788.5prime
TCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGTTCGTAAA
CGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTGGCGCAGG
CTGTTTCCCACTGCGGCACCATATGGGAGCCTTTTCAGAAAATGAACACC
CAGCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCA
ACGCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCC
AAAGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGC
CTCGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGT
CTTCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATG
TGCCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGA
TCCATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGG
TAGCGATGCCCTGCTTTCACTCTTCAACCACTCACGACCTGCCGCTGCCG
CCCAACGCGCTGGGGGGAGAAAACATGACCAAGCTGTACCGCAACATTGT
TGACTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTA
CACCCCGCCGAAAATATTACCATGGTGAGTCATGCTTCCGCTATTTGGAG
TGCGATGATGACTTCAGGGACGGGGGCGAAAAATCCAGGTGTTTGATATC
AGTACTTGCTATTCATATTGAAGATGAGGTCATGATGTCGCTGATTGATG
ACGAGAAATCAACAAATTCGCGACGATGCTTTTTTAGAGGACTTTTCCGA
GTTACGCAGATGCTGTCAGTACACGAGATATGATCGACCAGTACT
FMO13788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mael-RC | 1839 | CG11254-RC | 334..1187 | 10..853 | 3850 | 97.8 | Plus |
| mael-RD | 2143 | CG11254-RD | 647..1491 | 10..853 | 3705 | 96.7 | Plus |
| mael-RB | 1830 | CG11254-RB | 334..1178 | 10..853 | 3705 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22724985..22725499 | 328..835 | 1980 | 96.7 | Plus |
| 3L | 28110227 | 3L | 22724729..22724929 | 128..328 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 22724566..22724685 | 10..129 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:40:29 has no hits.
FMO13788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:14 Download gff for
FMO13788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RC | 328..1180 | 4..846 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:18 Download gff for
FMO13788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RC | 328..1180 | 4..846 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:18 Download gff for
FMO13788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22724560..22724685 | 4..129 | 97 | -> | Plus |
| 3L | 22724731..22724929 | 130..328 | 100 | -> | Plus |
| 3L | 22724986..22725513 | 329..846 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:14 Download gff for
FMO13788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22717660..22717785 | 4..129 | 97 | -> | Plus |
| arm_3L | 22717831..22718029 | 130..328 | 100 | -> | Plus |
| arm_3L | 22718086..22718613 | 329..846 | 96 | | Plus |
