FMO13795.5prime Sequence
672 bp (672 high quality bases) assembled on 2013-08-24
> FMO13795.5prime
TCAGTCGACATGGCATCCGCTACGGTGCCGCTGCTCGACGATGACACGAT
ACCCTTTGGCGAGGAGGACGAGATGCGGGATCCCAGTCGCGCGGGTCAGA
AATACACGCACCCGTACGTCACCTTCTTCCACCTGTTCTTCAGGGGCGCC
GCCATCCTGATCTATATGTTCTGCGGTTGGTTCAGCGACTCCTTCATCAC
CAGCTTCGTTTTCGTGGTGCTCTTCCTGTCCGCCGACTTCTGGACGGTGA
AGAACATCTCGGGCAGATTGCTGGTGGGTCTCCGCTGGTGGAACTACGTC
GACGACGATGGCGTATCGCACTGGGTGTTTGAGTCAAAGAACAGTCGGGT
CAACAAGAACGAGCAGCGCATCTTCTGGCTGGGACTCATCCTCTGTCCCG
TCTTCTGGGGCCTCTTCTTCCTGTTCGCCCTATTCGGCCTGAAGTTCAAA
TGGCTACTGCTGGTAATGATCGCCATTGCGCTGAATGCCGCCAATCTGTA
TGGCTACGTCAAGTGTAACTATGGCGCCAATAAGGATCTGAATTCCGCCG
CCACAGACTTTGTGAAAACGCAGTTCTTCAAGAATGCCGTGGACATCATG
ACAAGGCCCAGTGGCGCCCCACCGCCCACAAATGTACGCCCGACGGGAGT
CGTTGCAAGCTTTCTAGACCAT
FMO13795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-RB | 1007 | CG5021-RB | 140..785 | 9..654 | 3185 | 99.5 | Plus |
| CG5021-RA | 933 | CG5021-RA | 165..794 | 25..654 | 3105 | 99.5 | Plus |
| CG5021-RD | 1022 | CG5021-RD | 140..800 | 9..654 | 3025 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8967581..8967892 | 343..654 | 1530 | 99.4 | Plus |
| 3L | 28110227 | 3L | 8967278..8967516 | 104..342 | 1165 | 99.2 | Plus |
| 3L | 28110227 | 3L | 8967127..8967211 | 24..108 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:40:41 has no hits.
FMO13795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 18:45:21 Download gff for
FMO13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RB | 134..791 | 2..661 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:21:27 Download gff for
FMO13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RB | 134..791 | 2..661 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:21:27 Download gff for
FMO13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8967282..8967516 | 108..342 | 99 | -> | Plus |
| 3L | 8967581..8967898 | 343..661 | 98 | | Plus |
| 3L | 8967128..8967210 | 25..107 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 18:45:21 Download gff for
FMO13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8960228..8960310 | 25..107 | 100 | -> | Plus |
| arm_3L | 8960382..8960616 | 108..342 | 99 | -> | Plus |
| arm_3L | 8960681..8960998 | 343..661 | 98 | | Plus |
