FMO13801.5prime Sequence
1083 bp (933 high quality bases) assembled on 2013-10-14
> FMO13801.5prime
TCAGTCGACATGCCATACGTCCAAGCTCCGGAGGCGCGGCCAGTGCCCGA
TGAGCGCTATCCGGGCAGCCAGCAGGATAGGAAGGATATCGCCACCCAGA
CCGTGCGGAGCAGCAAGCCCAAAGACCTGCGACCGCCTTCGCCGCCGACG
CCGTCCCAGACCCTAAACTCCTCTTCCCTTCCGCCCCCAATGTCCGACCA
GGATGCTGATCCCTCCCTGGATGTGCCCACCGGCGTGGCGATGCCCTACA
ACATCGACTGGATATTCCCTAGGCTGAGAAACCCCTCGAAGTTCTGGTAC
GTGGTCAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAAGTTGT
GCTGATGTTTTTGAATAAACCCCGCGTCTATAACAGGGAGCGACTGATCC
AGCTGATAACGAAGCGACCCAAGGGCATTCCCCTGGTCACCGTGTCCAAC
CACTACTCCTGCTTCGACGATCCTGGGCTGTGGGGCTGCCTTCCCCTGGG
AATTGTCTGCAATACCTATAAAATTCGTTGGTCAATGGCCGCTCACGACA
TTTGCTTCACTAACAAGCTGCACTCGCTCTTCTTCATGTTTGGCAAGTGC
ATACCTGTTGTGCGTGGCATCGGTGTCTACCAGGATGCCATCAACCTGTG
CATCGAGAAGGCCGCACTGGGCCATTGGATCCATGTGTTTCCCGAAGGCA
AGGTGAACATGGATAAGGAGGAGCTGCGTCTCAGTGGGGCGTGGGTAGGA
TCATCTACGAGTCGCCGAAGATCCCCATCATTCTGCCCATGTGGCACGAG
GGCATGGACGATCTGTTGCCCATGTGGAGCCCTATGTGATACAGCGTGTA
AGCAAGTGACGCTGAATGTTGGCCAGCCATTGACCTCCACGACTTTATTC
TGGACCTAAAAAACGACAGTACCGGAGCCAACGGCGCGAAGTCTCATTAA
CAGACAAATCAAGCAGCTTTCGGGACTTGGCGGACGAAACGGAGAAATGC
ACAGAAAAGCGCACCTCAGCTTTCTAGAACATTCGTTTGGGCGGCCGGGC
CAGTAAGTGGTCTAATTCATATCTATATCCTAT
FMO13801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taz-RC | 1174 | CG8766-RC | 67..1072 | 9..1005 | 4475 | 97.2 | Plus |
| Taz-RA | 1776 | CG8766-RA | 479..1481 | 12..1005 | 4460 | 97.2 | Plus |
| Taz-RD | 1323 | CG8766-RD | 103..1104 | 13..1005 | 4455 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12754408..12754751 | 355..12 | 1690 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12753454..12753817 | 949..592 | 1385 | 95.9 | Minus |
| 2R | 25286936 | 2R | 12753890..12754127 | 593..356 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:50:40 has no hits.
FMO13801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:25 Download gff for
FMO13801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RC | 63..1064 | 1..998 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:48:59 Download gff for
FMO13801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RC | 63..1064 | 1..998 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:48:59 Download gff for
FMO13801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12753465..12753816 | 593..938 | 96 | <- | Minus |
| 2R | 12753891..12754127 | 356..592 | 100 | <- | Minus |
| 2R | 12754408..12754757 | 1..355 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:25 Download gff for
FMO13801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8640970..8641321 | 593..938 | 96 | <- | Minus |
| arm_2R | 8641396..8641632 | 356..592 | 100 | <- | Minus |
| arm_2R | 8641913..8642262 | 1..355 | 98 | | Minus |
