FMO13805.5prime Sequence
672 bp (672 high quality bases) assembled on 2013-10-14
> FMO13805.5prime
TCAGTCGACATGAGTAATCTGAAACAAAAGGATAGCAAGCCGGAGGTGGC
AGTAACAAAATCAGTGAAAACCTATAAAAAATCAATTGAATATGTTAATT
CCGACGCCTCCGACATTGAAGAAGATATCAATAGGGCAGAGGACGAATAC
GCCTCATCGTCTGGCTTTGTTAATTTTCTGAGGGACTTTAAGAAGCGCTA
CGGAGAATATTACTCGAATAACGAGATAAGACGGGCTGCTGAAACCCGAT
GGAACGAAATGTCATTCCGTCATCGATGCCAGTATTCTGCGGAACCATTG
GACACTTTTCATGTAGAGCCCAACAGTGTGAGCAGTCTTCAGCGTTCTAG
TGAGGGCGAGCACAGAATGCACTCTGAAATAAGTGGCTGCGCAGACACTT
TCTTCGGTGCCGGTGGCTCCAATAGCTGCACTCCAAGAAAGGAGAACAAG
TGTTCCAAGCCCAGGGTGCGGAAGAGTTGCCCCAAACCACGGGCGAAAAC
CTCGAAGCAACGTCGCAGTTGCGGCAAACCGAAGCCCAAGGGCGCCCGAC
CCCGGAAGGCATGTCCCCGCCCCAGGAAGAAGATGGAATGCGGCAAGGCG
AAGGCAAAGCCAAGGTGTCTTAAGCCCAAGAGCTCCAAGCCCAAGTGCTC
GATGGCAAGCTTTCTAGACCAT
FMO13805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst77F-RA | 1065 | CG3354-RA | 150..794 | 10..654 | 3225 | 100 | Plus |
| Mst77Y-9-RA | 660 | CG45769-RA | 16..654 | 10..651 | 2450 | 92.2 | Plus |
| CG45764-RA | 942 | CG45764-RA | 147..785 | 10..651 | 2450 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20817172..20817535 | 654..291 | 1820 | 100 | Minus |
| 3L | 28110227 | 3L | 20817596..20817878 | 292..10 | 1415 | 100 | Minus |
| Y | 3667352 | Y | 3341184..3341540 | 291..651 | 1375 | 93.4 | Plus |
| Y | 3667352 | Y | 3371242..3371596 | 293..651 | 1365 | 93.3 | Plus |
| Ymm | 880023 | Ymm | 515762..516116 | 651..293 | 1365 | 93.3 | Minus |
| Y | 3667352 | Y | 3358926..3359280 | 293..651 | 1350 | 93 | Plus |
| Y | 3667352 | Y | 3289701..3290058 | 291..651 | 1350 | 92.2 | Plus |
| Y | 3667352 | Y | 3285354..3285711 | 291..651 | 1335 | 92 | Plus |
| Y | 3667352 | Y | 3302187..3302544 | 291..651 | 1335 | 92 | Plus |
| Y | 3667352 | Y | 3336760..3337117 | 291..651 | 1335 | 92 | Plus |
| Y | 3667352 | Y | 3332337..3332693 | 291..651 | 1330 | 92.5 | Plus |
| Y | 3667352 | Y | 3293966..3294323 | 291..651 | 1320 | 91.7 | Plus |
| Y | 3667352 | Y | 3350011..3350368 | 291..651 | 1320 | 91.7 | Plus |
| Y | 3667352 | Y | 3354465..3354822 | 291..651 | 1320 | 91.7 | Plus |
| Y | 3667352 | Y | 3297764..3298120 | 291..651 | 1315 | 92.2 | Plus |
| Y | 3667352 | Y | 3327916..3328273 | 291..651 | 1305 | 91.4 | Plus |
| Y | 3667352 | Y | 3319090..3319436 | 291..651 | 1135 | 88.9 | Plus |
| Y | 3667352 | Y | 3323503..3323849 | 291..651 | 1135 | 88.9 | Plus |
| Y | 3667352 | Y | 3336415..3336697 | 10..292 | 1100 | 92.6 | Plus |
| Y | 3667352 | Y | 3293621..3293903 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3289355..3289637 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3301842..3302124 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3318745..3319027 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3323158..3323440 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3327571..3327853 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3349666..3349948 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3354120..3354402 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3358586..3358868 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3370902..3371184 | 10..292 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3297419..3297701 | 10..292 | 1055 | 91.5 | Plus |
| Y | 3667352 | Y | 3340839..3341121 | 10..292 | 1055 | 91.5 | Plus |
| Y | 3667352 | Y | 3345262..3345544 | 10..292 | 1055 | 91.5 | Plus |
| Y | 3667352 | Y | 3376297..3376579 | 10..292 | 1025 | 90.8 | Plus |
| Y | 3667352 | Y | 3285012..3285291 | 10..292 | 1005 | 91.2 | Plus |
| Y | 3667352 | Y | 3331995..3332274 | 10..292 | 1005 | 91.2 | Plus |
| Y | 3667352 | Y | 3345663..3345944 | 367..651 | 1000 | 90.9 | Plus |
| Y | 3667352 | Y | 3364784..3365040 | 395..651 | 985 | 92.2 | Plus |
| Y | 3667352 | Y | 3376698..3376978 | 367..651 | 965 | 90.9 | Plus |
| Y | 3667352 | Y | 3364536..3364742 | 10..219 | 715 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:50:55 has no hits.
FMO13805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:31 Download gff for
FMO13805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst77F-RA | 150..797 | 10..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:20 Download gff for
FMO13805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst77F-RA | 150..797 | 10..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:20 Download gff for
FMO13805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20817169..20817534 | 292..658 | 99 | <- | Minus |
| 3L | 20817597..20817878 | 10..291 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:31 Download gff for
FMO13805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20810269..20810634 | 292..658 | 99 | <- | Minus |
| arm_3L | 20810697..20810978 | 10..291 | 100 | | Minus |
