FMO13807.5prime Sequence
1021 bp (923 high quality bases) assembled on 2013-10-14
> FMO13807.5prime
TCAGTCGACATGATTTCAGGAATTATGAAGCTCTCTGACACCATGGCCAC
GCCTATAGAAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGTATGG
TGCACGTGAGCGATGGCAAGAGCAGACCAGAACCCCTTCGACTTAATCTT
ACCATGGAGTTGCTTTCGCTCCAGAAGCTGGAAGTGGTAACACCAAGTAG
TTGTCACCCCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAA
TTACGCGCCAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCC
GAGCATAAACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGC
GGACATAACGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACG
GAGAATACATCACGGCATGTCCTCACGATGATGCTGTCAATATATTGAGA
AACGCTGGCGATATTGTTGTACTCACTGTTAAGCATTATCGCGCAGCCAC
GCCTTTCCTTCAGAAACAACTGACCAAGGACACGCCCGACTCGGACAACG
ATGTCACATGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTC
AATAGTGGAACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTC
GGAGCCCGAGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGG
CATATGTGACGAGGTACATCTATGGCACCGACAAGCTGCGACAAAATGCC
TTCGAAGTTCGCGGTCTGAATGGAATTTCCACAGGTGTCATACACTGTGA
CGAACTGGCCCATACTTAGTCAGTTGCTGAAATTGATAACGGACATGTTG
TGGGCCTACGCATTAACAGATGAAGCTATATAATAGAAACCTTGCTGTGG
GCGAGCGCATGAGTAAATGGGCTGGTGATGAGGTGTCATTAACCACAATT
ATCGTGCAGCTACAGCCCAGTTCTACTGCTCAAGACTTGACTGATGCTCT
TGGAAACGCACACTAAGTGGC
FMO13807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn2-RE | 1888 | CG4905-RE | 32..1046 | 10..1009 | 4445 | 96.8 | Plus |
| Syn2-RA | 3671 | CG4905-RA | 363..1369 | 18..1009 | 4405 | 96.7 | Plus |
| Syn2-RB | 3475 | CG4905-RB | 169..1173 | 20..1009 | 4395 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16554966..16555253 | 233..520 | 1410 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16555319..16555483 | 521..685 | 810 | 99.4 | Plus |
| 2R | 25286936 | 2R | 16555599..16555776 | 680..857 | 750 | 97.2 | Plus |
| 2R | 25286936 | 2R | 16554757..16554909 | 83..235 | 720 | 98 | Plus |
| 2R | 25286936 | 2R | 16554618..16554694 | 10..86 | 385 | 100 | Plus |
| 2R | 25286936 | 2R | 16555843..16555901 | 868..925 | 215 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:51:01 has no hits.
FMO13807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:36 Download gff for
FMO13807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 25..1062 | 1..1021 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:28 Download gff for
FMO13807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn2-RE | 25..1062 | 1..1021 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:28 Download gff for
FMO13807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16555605..16555789 | 686..869 | 96 | -> | Plus |
| 2R | 16554611..16554692 | 1..84 | 95 | -> | Plus |
| 2R | 16554759..16554908 | 85..234 | 98 | -> | Plus |
| 2R | 16554968..16555253 | 235..520 | 99 | -> | Plus |
| 2R | 16555319..16555483 | 521..685 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:36 Download gff for
FMO13807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12443110..12443294 | 686..869 | 96 | -> | Plus |
| arm_2R | 12442116..12442197 | 1..84 | 95 | -> | Plus |
| arm_2R | 12442264..12442413 | 85..234 | 98 | -> | Plus |
| arm_2R | 12442473..12442758 | 235..520 | 99 | -> | Plus |
| arm_2R | 12442824..12442988 | 521..685 | 99 | -> | Plus |
