FMO13809.5prime Sequence
920 bp (920 high quality bases) assembled on 2013-10-14
> FMO13809.5prime
TCAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACACTGCTCC
CAGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGTCCCATTG
TCCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACACGATCGC
CACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGTCCAAGCG
TATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAATAAGGAGA
AGGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGCGGTTAAC
TTTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACCAGTTCCG
CAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTACACCTACA
TGGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAACCAAGAGC
GTTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCGAGGAGAG
CAGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAGGCTATAG
CTCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCCCACGGAA
TATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCCGCTGCAT
AAATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACCTGCAAGG
CCCTGCAGCATTTCTACAGCGGTTACATCAGTCTAAACTGTCAGAGAGCC
CGTGAACTATGGCGTAAGATCACTACCATGAAGCAGAGCGTTCTTAAGGC
CGAGAATGTTTGCTACAATGTAAAAGTTCGCGGCGGAGAGGCTGCAAAAT
GGGGCGCCACTTTTGATCAAAGCCAGCCGATGAAGTTGACGAGGGCTTCT
ACGCAAGCTTTCTAGACCAT
FMO13809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RB | 1077 | CG5063-RB | 134..1027 | 10..902 | 4445 | 99.9 | Plus |
| Trax-RA | 1127 | CG5063-RA | 134..846 | 10..722 | 3565 | 100 | Plus |
| Trax-RA | 1127 | CG5063-RA | 896..1077 | 722..902 | 885 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362537 | 10..722 | 3565 | 100 | Plus |
| 3R | 32079331 | 3R | 15362587..15362768 | 722..902 | 860 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:54:13 has no hits.
FMO13809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:04 Download gff for
FMO13809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RB | 128..1030 | 1..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:07 Download gff for
FMO13809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RB | 128..1030 | 1..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:07 Download gff for
FMO13809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361819..15362537 | 1..722 | 99 | -> | Plus |
| 3R | 15362588..15362771 | 723..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:04 Download gff for
FMO13809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187541..11188259 | 1..722 | 99 | -> | Plus |
| arm_3R | 11188310..11188493 | 723..906 | 98 | | Plus |
