FMO13811.5prime Sequence
1095 bp (1013 high quality bases) assembled on 2013-10-14
> FMO13811.5prime
TCAGTCGACATGTCGCTCGGTGGAGAAAGTAAGCACACGCCAAAGTCTTC
CAATCTGAGGCCGTTGGACGACGACCAGCTGGTTAGGATCATCAGCACGC
CACGTCCGTCAAATGGAGTGAGCCAGCATCCCGCCCAGGACCGCCTCAAG
CGCCTGCAGGGCCAACTAAAGCGGGTGCAGGACAACGAGAAGGAGCAGGG
GACCACCAAGCGGATCACCCACAGTTCCTCCGCATCTCGTCGATCAAGTG
CGTCCACATCTACGCCCCAGCGACTCCTGAAGTTTCCGCCTAAGGTGGCG
ATGAATGCCTGGGAAAAGCCAAAAGCCCTGGTCGATGCCAATCGCCTGAA
GGCGGGACGTACCCAAACTGCCTACCAGCGTCTCATGCTGTTAAGAGCTT
CGCTGCAGCAGAAGCAGCTATATGAGGAGCGCAACAACAATATTGTGGCC
AAGATCAACGAAGAGGTGATAGAAAAACAACCAGAAGCCTGCAACATCAC
AAATCCAAGTGCATTTGATGGCTCGACGGCCAGCGATATGGAGGTCGAGC
CCATGGAATGGCAGGAGTCTATTGAAGAGGAGGCGGCACAGAATGATCAG
GATGAGGCTAAGAAAGGGGACGACACTCTATTGATGCTGCCGGCGGAGTC
CATTGAAGAGGAGGCGCCACAGAAAGGTCAGGATGAGGCTAAGGAAGAGG
ACGACACTATATTGATGCTGCAGGCGGCCGATGCCGAGGAGCTGCCCCCA
AGGCTTGAGGATTACATGTACTTTGTGCTGGACACCAACGTCCTCATACA
CAACCACAAGTTCGTGGAGAGACTGACCGATGTGGTGCTGCCGGGCACGG
TGGGCAGCATGCTGTACCTTCCGTACATAGTAATCAAGAGCTGGACAGCT
AAAGAGCAAGTACCAGTCGGACTGCCTGCAGCGTGTGATTGCCATGCGAG
CAATACGCTTTTTGAACACCAAGTTCGACGAAAGCTTTCAATACAGGCTC
AATCCGCTTGGAAGGAGCGATCACTGATCAAGATCGACTGCCGAATGAAA
GCATTTGATTGCTGCTGCAGACCGGCAAGGCCAAGTCCAATGATT
FMO13811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7206-RB | 1585 | CG7206-RB | 88..1158 | 10..1070 | 5030 | 98.6 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 506..1216 | 370..1070 | 3230 | 97.9 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 88..448 | 10..370 | 1805 | 100 | Plus |
| CG7206-RB | 1585 | CG7206-RB | 642..724 | 645..727 | 295 | 90.4 | Plus |
| CG7206-RB | 1585 | CG7206-RB | 723..805 | 564..646 | 295 | 90.4 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 700..782 | 645..727 | 295 | 90.4 | Plus |
| CG7206-RC | 1643 | CG7206-RC | 781..863 | 564..646 | 295 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18089302..18089925 | 991..370 | 3020 | 99.7 | Minus |
| X | 23542271 | X | 18089983..18090238 | 370..115 | 1280 | 100 | Minus |
| X | 23542271 | X | 18090316..18090422 | 116..10 | 535 | 100 | Minus |
| X | 23542271 | X | 18089568..18089650 | 646..564 | 295 | 90.4 | Minus |
| X | 23542271 | X | 18089649..18089731 | 727..645 | 295 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:54:17 has no hits.
FMO13811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:06 Download gff for
FMO13811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7206-RB | 82..1152 | 2..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:09 Download gff for
FMO13811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7206-RB | 82..1152 | 2..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:09 Download gff for
FMO13811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18089983..18090237 | 116..370 | 100 | <- | Minus |
| X | 18090317..18090428 | 2..115 | 96 | | Minus |
| X | 18089295..18089924 | 371..997 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:06 Download gff for
FMO13811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17984016..17984270 | 116..370 | 100 | <- | Minus |
| arm_X | 17984350..17984461 | 2..115 | 96 | | Minus |
| arm_X | 17983328..17983957 | 371..997 | 99 | <- | Minus |
