FMO13815.5prime Sequence
979 bp (856 high quality bases) assembled on 2013-10-14
> FMO13815.5prime
TCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCTCCGTGGA
GACCCAGTTGACGGCCACCTACTTCCGAGGTTCGTCCAGCAATCCGACAC
TGCTCCTGCGTTCCTGGCGGACGATTCCTCGAGCGGATGCCCCTGGTTTC
GGAGCGATTCGGCGGCGGTTTCTGGCTGTGCCCGTCATCTGTCCAAGTCT
CGTCAAGCTGCAAAAACTACGAAAAGTCGGCTTCAGAGGCATGCACAGCA
CATTGGAGGACGTGCAGCTGGAGGGCATGGAGATCAAGATCCTGCCGGCC
CTGCAGGACAACTATATGTATCTGATTGTAGACACGAAGACGCGCGAGGC
GGCCGTGGTGGATCCCGTGGAGCCGGAGCTGGTCATTAAGACGGTGCAGG
AGCAGCAGCTGACCCTCAGCAAGGTGCTGACCACGCACCATCACTGGGAC
CACGCCGGTGGCAATGAAAAGCTGCTCAAGCTGTGGGAGAAGGAGCTGGA
CGTGTATGGCGGCGATGACCGCATCGGGGCATTGAACAAAAAGGTTCAGC
AGGACGACACCTTCACCATTGGTGGTCTGCATGTCAAGTGCTTGTCCACG
CCGTGCCACACTACCGGCCACATCTGCTACCACATCACCGCGCAGCAGGG
CAGCGGCGAGGGAGCCGTCTTCACCGGCGACACCCTCTTCCAGGGCGGAT
GCGGCCGCTTCTTCGAGGGCACTCCCGAGGAAATGTACGAGGCGCTGTGC
ACAAAGCTCTCCGCCTTGCCGGACGGCACAAAGTGTTCTGTGGCCACGAG
TACACGCTGCATAACATGAGCTTCGCCGTCACGTCGAGCCCGACACGAGG
TCATCCACCAAAGGATCCAGTGGGCCAAGCACCGGCGCGCTCCAGGATCC
CACTGTGCACTTCCACAAATGACGAAGAAAGTCCAGGAAATCACATTATG
CGCGTTCAAGCAGCCCCGCGTCATAGCCT
FMO13815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-RC | 1231 | CG4365-RC | 109..1068 | 10..965 | 4340 | 97.3 | Plus |
| CG4365-RA | 1092 | CG4365-RA | 154..914 | 209..965 | 3360 | 96.7 | Plus |
| CG4365-RB | 1013 | CG4365-RB | 75..835 | 209..965 | 3360 | 96.7 | Plus |
| CG4365-RA | 1092 | CG4365-RA | 84..153 | 10..79 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20799143..20799847 | 209..908 | 3205 | 98.3 | Plus |
| 3L | 28110227 | 3L | 20798790..20798988 | 10..208 | 980 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:51:08 has no hits.
FMO13815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:39 Download gff for
FMO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RC | 99..1073 | 1..971 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:35 Download gff for
FMO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RC | 99..1073 | 1..971 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:35 Download gff for
FMO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20798780..20798988 | 1..208 | 97 | -> | Plus |
| 3L | 20799143..20799908 | 209..971 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:39 Download gff for
FMO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20791880..20792088 | 1..208 | 97 | -> | Plus |
| arm_3L | 20792243..20793008 | 209..971 | 96 | | Plus |
